BAC Information

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BAC

Clone NameMSMg01-542D16
Chromosome7 (Build37)
Map Location 47,291,481 - 47,453,461
singlet/doubletdoublet
Overlap geneEG628161
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542D16.T7 (MSMg01no542_d16.b1)MSMg01-542D16.TJ (MSMg01no542_d16.g1)
ACCAG608055AG608056
length767751
length of high quality
(start - end)		697 (48 - 744)520 (75 - 594)
definitionCHROMAT_FILE: MSMg01no542_d16.b1 PHD_FILE: MSMg01no542_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:11 2005CHROMAT_FILE: MSMg01no542_d16.g1 PHD_FILE: MSMg01no542_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,452,803 - 47,453,461)(47,291,481 - 47,292,000)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGGCCATTTCTTACAGCTATTGATTGCATCCCAGCTCTTTC
ATGGCAACTTCCTCTGAAGGGAGGGGCCGGCTCATGCCTCAGGAGGTCAC
CAAGAACTCACATATCTGGGCAGACAGAAAGATGGAAATTTCAGGATGTA
TATCCTCAACCCTGTACATAGGCAATATAAAAGAGAACAAACAGCTACTG
GATCAGGAGATTTTGACCAACCAAAGTGCAGAAAGAAAAAAAGTTCTTTG
ACTGTTGATTTGCCTGCACGCTATTGCACAAAGTTCTAGGATTACGGTTT
TCATAACATTATCCTTGTTGGGAGGGAATTTTTAATGAAGCAACTAGTTT
TCAATATGTTACAACATCCAGATTCAGACTAAAATGATGTCAGCTGAATC
AAAATCCAGTCAGGATGTAGCTATGTTCCAGTCATTGTGATTAAAAAAAA
GTTTACATAATGACCCTCAAGAAACTACTAATAATACCATTGTAAGGCCA
TTATTGTACCTTCTTTCGCAGATTCAGCTAATATATGTCAGAACCCAGCT
GTCTGAATGCTCATGAACTGAGTTTTAGTTTTGAGACAGAATCTCACTGT
GTAACACTGGCTGATCTGAAACTTGCTATGTAGACCAAGTAGGCTTCCAC
CTCGTAGAGACCCACCTGCCTCTTCCTCTGCTTCTGCCTCCTGAGTGCTG
GGATTAAAGGTGTGCAA

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTAAGGGCATCTTAGGGGCTGGAA
AGACAAGATGGCTTCGTTGTGGTTTAAGAGCTTCTAGAAGAGCTGAGTTA
GATTCCTAGCACCTATATGATGGTTCCCATTCATCTGTAATCCTATTCCA
GGGAGATATGACGCCTCCTTCTGGCCTCTTTGTGTGTTGCATGCATGTGT
GGCAGCACAGTCAGTCATACATTCGGGCAAAATAGTCATAGACAGAAATA
GGATAAACCAAATAGATGCGAAATTTGGATATAGATTAAAAGGGAAGGTG
GGCCCAGGAAAATAGAAACAGTGATTGGGATGAATGTCTACAAGCTGTGG
GGTCTAGGGAAGGTATGGAACGACCCTGTCTTAGAGTCTTGGTCCTTGGG
GCTAAGAGTGGAGTCCTACACATACAGCTTGAACTTCTCACTTTCAGAAA
ATATGAAGCGAAACACTAATTGCTTTGAGCCTCTAATTTATAATCTTTTA
CCAGAGGCACTCTTGGAAAACCACTGGGTAGCTATTTCTTCCAGGCAGAA
ACACTTCTTCCTGGAGGGAAGCAGGAAGCTCAAAAAACTTTGAGAGTCAC
TAGCCTCTCCTCCAGGTCAATGATAGCAAATAATCACTGGAGATGAAATG
CTGCCTANAAGTTGGGCAGGGAGTCCAGAGATGGTCTATCCTGCCCCTGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_d16.b1 MSMg01no542_d16.b1 CHROMAT_FILE:
MSMg01no542_d16.b1 PHD_FILE: MSMg01no542_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:11 2005
         (697 letters)



>mm_chr7_47452365_47453461
          Length = 1097

 Score = 1274 bits (659), Expect = 0.0
 Identities = 659/659 (100%)
 Strand = Plus / Minus

                                                                        
Query: 39   catcccagctctttcatggcaacttcctctgaagggaggggccggctcatgcctcaggag 98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 catcccagctctttcatggcaacttcctctgaagggaggggccggctcatgcctcaggag 1038

                                                                        
Query: 99   gtcaccaagaactcacatatctgggcagacagaaagatggaaatttcaggatgtatatcc 158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 gtcaccaagaactcacatatctgggcagacagaaagatggaaatttcaggatgtatatcc 978

                                                                        
Query: 159  tcaaccctgtacataggcaatataaaagagaacaaacagctactggatcaggagattttg 218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  tcaaccctgtacataggcaatataaaagagaacaaacagctactggatcaggagattttg 918

                                                                        
Query: 219  accaaccaaagtgcagaaagaaaaaaagttctttgactgttgatttgcctgcacgctatt 278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  accaaccaaagtgcagaaagaaaaaaagttctttgactgttgatttgcctgcacgctatt 858

                                                                        
Query: 279  gcacaaagttctaggattacggttttcataacattatccttgttgggagggaatttttaa 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  gcacaaagttctaggattacggttttcataacattatccttgttgggagggaatttttaa 798

                                                                        
Query: 339  tgaagcaactagttttcaatatgttacaacatccagattcagactaaaatgatgtcagct 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  tgaagcaactagttttcaatatgttacaacatccagattcagactaaaatgatgtcagct 738

                                                                        
Query: 399  gaatcaaaatccagtcaggatgtagctatgttccagtcattgtgattaaaaaaaagttta 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  gaatcaaaatccagtcaggatgtagctatgttccagtcattgtgattaaaaaaaagttta 678

                                                                        
Query: 459  cataatgaccctcaagaaactactaataataccattgtaaggccattattgtaccttctt 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  cataatgaccctcaagaaactactaataataccattgtaaggccattattgtaccttctt 618

                                                                        
Query: 519  tcgcagattcagctaatatatgtcagaacccagctgtctgaatgctcatgaactgagttt 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  tcgcagattcagctaatatatgtcagaacccagctgtctgaatgctcatgaactgagttt 558

                                                                        
Query: 579  tagttttgagacagaatctcactgtgtaacactggctgatctgaaacttgctatgtagac 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  tagttttgagacagaatctcactgtgtaacactggctgatctgaaacttgctatgtagac 498

                                                                       
Query: 639  caagtaggcttccacctcgtagagacccacctgcctcttcctctgcttctgcctcctga 697
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  caagtaggcttccacctcgtagagacccacctgcctcttcctctgcttctgcctcctga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_d16.g1 MSMg01no542_d16.g1 CHROMAT_FILE:
MSMg01no542_d16.g1 PHD_FILE: MSMg01no542_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:12 2005
         (520 letters)



>mm_chr7_47291281_47292200
          Length = 920

 Score = 1006 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaagggcatcttaggggctggaaagacaagatggcttcgttgtggtttaagagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaagggcatcttaggggctggaaagacaagatggcttcgttgtggtttaagagcttc 260

                                                                       
Query: 61  tagaagagctgagttagattcctagcacctatatgatggttcccattcatctgtaatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaagagctgagttagattcctagcacctatatgatggttcccattcatctgtaatcct 320

                                                                       
Query: 121 attccagggagatatgacgcctccttctggcctctttgtgtgttgcatgcatgtgtggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccagggagatatgacgcctccttctggcctctttgtgtgttgcatgcatgtgtggca 380

                                                                       
Query: 181 gcacagtcagtcatacattcgggcaaaatagtcatagacagaaataggataaaccaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacagtcagtcatacattcgggcaaaatagtcatagacagaaataggataaaccaaata 440

                                                                       
Query: 241 gatgcgaaatttggatatagattaaaagggaaggtgggcccaggaaaatagaaacagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgcgaaatttggatatagattaaaagggaaggtgggcccaggaaaatagaaacagtga 500

                                                                       
Query: 301 ttgggatgaatgtctacaagctgtggggtctagggaaggtatggaacgaccctgtcttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgggatgaatgtctacaagctgtggggtctagggaaggtatggaacgaccctgtcttag 560

                                                                       
Query: 361 agtcttggtccttggggctaagagtggagtcctacacatacagcttgaacttctcacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcttggtccttggggctaagagtggagtcctacacatacagcttgaacttctcacttt 620

                                                                       
Query: 421 cagaaaatatgaagcgaaacactaattgctttgagcctctaatttataatcttttaccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaaaatatgaagcgaaacactaattgctttgagcctctaatttataatcttttaccag 680

                                                   
Query: 481 aggcactcttggaaaaccactgggtagctatttcttccag 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcactcttggaaaaccactgggtagctatttcttccag 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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