BAC Information

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BAC

Clone NameMSMg01-542D17
Chromosome7 (Build37)
Map Location 5,328,043 - 5,328,737
singlet/doubletsinglet
Overlap genenone
Upstream geneGp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
Downstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542D17.T7 (MSMg01no542_d17.b1)MSMg01-542D17.TJ (MSMg01no542_d17.g1)
ACCAG608057AG608058
length755754
length of high quality
(start - end)		708 (48 - 755)676 (79 - 754)
definitionCHROMAT_FILE: MSMg01no542_d17.b1 PHD_FILE: MSMg01no542_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:12 2005CHROMAT_FILE: MSMg01no542_d17.g1 PHD_FILE: MSMg01no542_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATTGAGATGAACAGGATCTAGAACATTTCCAAATTCTTAGT
TAAGGAAATATTGTAGGACTGTTTAGACCAGTTTCATATATTTTCACACA
CACACACACACACACACACACACACACACACACACACACACATATATATA
TGAAAATATTCATATATATTACTAATATTGTTACAATATTATATTCTAGA
CAATATTAACATTAATATTGTTCAGAATATGAATAGTGTTCAATATATGT
AGTCAATATATATGAACAATATTAGTAAGAGAAGATATCTGGTGTTTAAT
AGCTCAGTAGTAGACAAAGAGACGTCTGAGTTTTTTCCTACTTGATTGCA
ATTTTTATGTCACCTAAAATGACAAAGACAGAGTTAGCTTCAGGGTTCCA
AATCATTTATGAATCTCTTCCAGTTGATTAATAACAAAAATACACAATAT
TTTGCTGTGAACATTAACAAAGGTCAGGTGTTTTGAGTAGGCACAAGTTT
TCACTATCCCTGAAAGCTGACCAGGTATGCTGGGGAAGATCCTATAAAGT
TTAAGACACATGTGTGAGAAAGTGGGAGAAGTCTCAATTTCTCACTGTTA
CCAGGTTTTAATGACTATTTCCAACAAAGTCAAACTGCCTTCTTTTAAAT
AAAACTAGTTGGAACTATCAATGCTTAAATATTTCTTAGAAATTTTATTT
TTGCA

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGACTGTAATA
GAGAGATTTCTCTCTCAAACTAAAACAACAGCAAAACCTCACTTATTTCC
AAATTACCGAATTTAACCCTTTTCCACTGTGCTTAGTTTTCTTCTTTGTT
TAGGAGATTCCTAATGTATCTGCCCTCCTTTTCCTAAGAGGCTCCCCACC
ATGATAGGTGTAAACAAGTATTAGTGCTCTGAGAGCACACTAGAGCAGTG
TGGAGAAGGAGCTGTGAGTGTGGGCTGTATTGGAAGGAGAAGGGCTGTTG
GGCTGTGCTGCCTCCTGGAGCTCTTGGCTGTGTTGCACCGCTTCTCTCTC
TTCCTTTTTCCCCTAGGAAATCAAAATCAGCAATGAAAAGGGAGACATAA
CAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGG
CTATACTCAACAAAACTGGAGAACCCCAATGAAATGGACAAATTTCTAAA
AAGATACCAGGTACCAAATTAAATTAGGATCAGGTTAATGATCTAAACAG
TCCTATATCCCCTAAAGAAATGGAAGCAGTCATTAATAGTCTCCCAACCA
ATAAAAGTCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTC
AAAGAAGATCTAATTCCAGTTCTACACAAACTATTCCACAAATTAGAAGC
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_d17.g1 MSMg01no542_d17.g1 CHROMAT_FILE:
MSMg01no542_d17.g1 PHD_FILE: MSMg01no542_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:12 2005
         (676 letters)



>mm_chr7_5327843_5328921
          Length = 1079

 Score = 1220 bits (631), Expect = 0.0
 Identities = 671/695 (96%), Gaps = 19/695 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagctaggactgtaatagagagatttctctctcaaactaaaacaaca---gcaaa 57
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 201 caggacagctaggactgtaatagagagatttctctctcaaactaaaacaacaacagcaaa 260

                                                                       
Query: 58  acctcacttatttccaaattaccgaatttaacccttttccactgtgcttagttttcttct 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctcacttatttccaaattaccgaatttaacccttttccactgtgcttagttttcttct 320

                                                                       
Query: 118 ttgtttaggagattcctaatgtatctgccctccttttcctaagaggctccccaccatgat 177
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttaggagattcctaatgtgtctgccctccttttcctaagaggctccccaccatgat 380

                                                                       
Query: 178 aggtgtaaacaagtattagtgctctgagagcacactagagcagtgtggagaaggagctgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgtaaacaagtattagtgctctgagagcacactagagcagtgtggagaaggagctgt 440

                                                                       
Query: 238 gagtgtgggctgtattggaaggagaagggctg---------------ttgggctgtgctg 282
           ||||||||||||||||||||||||||||||||               |||||||||||||
Sbjct: 441 gagtgtgggctgtattggaaggagaagggctggtgggcacatggctgttgggctgtgctg 500

                                                                       
Query: 283 cctcctggagctcttggctgtgttgcaccgcttctctctcttcctttttcccctaggaaa 342
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcctggagctcttgactgtgttgcaccgcttctctctcttcctttttcccctaggaaa 560

                                                                       
Query: 343 tcaaaatcagcaatgaaaagggagacataacaacagatcctgaagaaatccaaaacacca 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaatcagcaatgaaaagggagacataacaacagatcctgaagaaatccaaaacacca 620

                                                                       
Query: 403 tcagatccttctacaaaaggctatactcaacaaaactggagaaccccaatgaaatggaca 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagatccttctacaaaaggctatactcaacaaaactggagaaccccaatgaaatggaca 680

                                                                       
Query: 463 aatttctaaaaagataccaggtaccaaa-ttaaattaggatcaggttaatgatctaaaca 521
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 aatttctaaaaagataccaggtaccaaagttaaattaggatcaggttaatgatctaaaca 740

                                                                       
Query: 522 gtcctatatcccctaaagaaatggaagcagtcattaatagtctcccaaccaataaaagtc 581
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 gtcctatatcccctaaagaaatggaagcagtcattaatagtctcccaaccaataaaagcc 800

                                                                       
Query: 582 caggaccagatgggtttagtgcagagttctatcagaccttcaaagaagatctaattccag 641
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caagaccagatgggtttagtgcagagttctatcagaccttcaaagaagatctaattccag 860

                                              
Query: 642 ttctacacaaactattccacaaattagaagcagaa 676
           ||||||||||||||||||||||| |||||||||||
Sbjct: 861 ttctacacaaactattccacaaaatagaagcagaa 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1079
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1069
Effective search space:   711954
Effective search space used:   711954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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