Query= MSMg01no542_e17.b1 MSMg01no542_e17.b1 CHROMAT_FILE:
MSMg01no542_e17.b1 PHD_FILE: MSMg01no542_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
(717 letters)
>mm_chr7_95178999_95180115
Length = 1117
Score = 1355 bits (701), Expect = 0.0
Identities = 710/713 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactcaaattcagttattcagaacacagcaagagtctttaacagcactttactt 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcaaattcagttattcagaacatagcaagagtctttaacagcactttactt 263
Query: 64 gaatgcctaggattccaattctggacaacctcaaacccttttaaaacctcattttcataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaatgcctaggattccaattctggacaacctcaaacccttttaaaacctcattttcataa 323
Query: 124 ttttattacccacatctctgtttgcacttcaatccctctcaaatccctccagaattcctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttattacccacatctctgtttgcacttcaatccctctcaaatccctccagaattcctt 383
Query: 184 gttgttctctgcatgtaagactctatgtgtccttcttgacacagatcccaactcttgcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgttctctgcatgtaagactctatgtgtccttcttgacacagatcccaactcttgcat 443
Query: 244 actcatctcagaaacaacctcgaaaagcctaagaactaggaggacaggtagtcagagtaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actcatctcagaaacaacctcgaaaagcctaagaactaggaggacaggtagtcagagtaa 503
Query: 304 tgatcccagctctcagtatcaatttcctgttttcctgagtttctggtaactatgacaaaa 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 tgatcccagctctcagtatcaatttcctgttttcctgagtttttggtaactatgacaaaa 563
Query: 364 taattgacaaataaaatgaaaaagaaaggattgttttgggatcctattatgaggttttaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taattgacaaataaaatgaaaaagaaaggattgttttgggatcctattatgaggttttaa 623
Query: 424 tccatcatggatgacagatggtagggtagttataatatctctcagttatagttacaagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccatcatggatgacagatggtagggtagttataatatctctcagttatagttacaagaa 683
Query: 484 tataaggcttcttgatcatggaacacaggtaggacaaaaagtggaagcagtatgccaacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tataaggcttcttgatcatggaacacaggtaggacaaaaagtggaagcagtatgccaacc 743
Query: 544 tcaagcctggtccctagtgatccttgtaatccatccagttctcacctagtagatattcaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcaagcctggtccctagtgatccttgtaatccatccagttctcacctagtagatattcaa 803
Query: 604 taacctcctgaaacatctccaccatccaggacaaagtgagcaaactcatgagcacgtggg 663
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 804 taacctcctgaaacatctccaccacccaggacaaagtgagcaaactcatgagcacgtggg 863
Query: 664 agacattttagatttaaaccataaggcatagaaatcaattttgattcatccat 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agacattttagatttaaaccataaggcatagaaatcaattttgattcatccat 916
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_e17.g1 MSMg01no542_e17.g1 CHROMAT_FILE:
MSMg01no542_e17.g1 PHD_FILE: MSMg01no542_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
(286 letters)
>mm_chr7_95201354_95202043
Length = 690
Score = 511 bits (264), Expect = e-149
Identities = 282/290 (97%), Gaps = 4/290 (1%)
Strand = Plus / Minus
Query: 1 catccccatcatagtttattgcataccctttgctttccattcccttaataaaagcttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 catccccatcatagtttattgcataccctttgctttccattcccttaataaaagcttctt 431
Query: 61 tcaaagagctgaaaaacctagaggtcattttttgttgttattttttattccttata---- 116
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 tcaaagagctgaaaaacctagagctcattttttgttgttattttttattccttatatttt 371
Query: 117 ttttataggaaggtctgaaaaattgtgctaagatttattctgcaattaaaacataaagaa 176
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttttatagggaggtctgaaaaattgtgctaagatttattctgcaattaaaacataaagaa 311
Query: 177 tgatataatagccctgcagaatgttgaagggaaggcttatcccagatctcatttgcagag 236
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 310 tgatataatagccctgcagaatgttgaagggaaggcttatcccagatcacctttgcagag 251
Query: 237 aacagctttgaaaaatatgacttctggtcacattgctgtagttgaacagg 286
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacagctttgaaaaatatgacttctggtcacattgctgtagttgaacagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 690
Length adjustment: 9
Effective length of query: 277
Effective length of database: 681
Effective search space: 188637
Effective search space used: 188637
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
