BAC Information

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BAC

Clone NameMSMg01-542F14
Chromosome7 (Build37)
Map Location 30,878,117 - 30,878,531
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566
Downstream geneZfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542F14.T7 (MSMg01no542_f14.b1)MSMg01-542F14.TJ (MSMg01no542_f14.g1)
ACCAG608145AG608146
length772763
length of high quality
(start - end)		673 (48 - 720)681 (77 - 757)
definitionCHROMAT_FILE: MSMg01no542_f14.b1 PHD_FILE: MSMg01no542_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:21 2005CHROMAT_FILE: MSMg01no542_f14.g1 PHD_FILE: MSMg01no542_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACAGCCAGGGCTACACAGAGAAACTGTATCAAAAAAATA
AAGCAAGGGGGCTGGAGAGATGGCTCAGCTGTTAAGAGCACTTACTGCTC
TTCCAGAGGTCCTGGGTTCAATTCCCAGTAAGCACATGAGGGCTCACAAC
CATCTGTAACAGGATCTGATACCCTTTTCTGGTGTGTCTGAACACAGCAA
CTGTTCTTACATACATAAAATAAATAAATCTTTTAAAAAATAACAAAACA
AACAAAAACGAGTGTATATTGCTCTTATAGAGGATCCCAGTTCAATTCCC
AGCACCTATCTGAAAGTGGCTCATAACCACGCTAAACTTCAGTCCAGGAG
GATCCCATCCCTGCCTCTGGTCTCTGGGCACCAGAACTTACATGTACATA
CATGTAACTAAATAAATGATAAAAGATGTACAGAGAATCCTTTATAAAAA
TAGGAAGGGAGGGGGGTGGCTCACAATCTGCAAAGCAATCTCATGCCGTC
TTCTGGCACATAGGTGTATAGGCAGACAGAGCATTCACATACATTAAATA
AATATTCTTTTAAAGATTTATTTATTATGTATACAGCATTCCACCTGAAT
GTATGCCTGCAGGCTAGAAGAGTGCACCACATCTCATTGTATGTACAGGA
GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGATGTCGGATCCCAT
TACAGATGGTTGTGAGCCACCC

NCCGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAACTCTGGAAGAGCAGTCGGT
GCTCTTAACTGCTAAGCCATCTCTCCAGCTCCCTACAGCTATTTTCTATC
AACCCTAACCCTTCCCCATAAAAGGGACTCCAAGAGCCAATAAGAAGCAG
CTCTCTGAAATCCTGACTTCAGGAGAGGCAGCCTACTTGCGGGCTTAGAT
TTTTTTTTTTTCAAAACCTACTTTATTTAGGGTTCTTAAACACTTCAACT
TCTCTTCTAATCCACCGACCAGAAGCAAGGGAGAAAGGTTAATAGGAAAA
GGGAGTCACAGACCCATTTAGAAGTAGTTTCTCGGGGCAATCCCACTCTT
CCTTGTCAGGATTCCAGCAGTCCAGGCCAATAGCAAACACCAAAAATGAA
TCAGTAGTGGCGGCAAGATCCAGCAGAAACTGCAACTGGCACAAATCAGA
GGGAGCAGCCAGGAGCAGCCGGAATACCACAAGAAGTTCTTTGGTGCATT
TCTCTCGACAAAGTGAAGACCAGCGAAGCTTTGTACAGAATAGGAATGCA
AGAGCATCCTCTCACTGTCTGTGGGGTTCCATTTATGTTCTTTCTAAACA
TTATGTGCCTTCTGAAGAGTCTGGTTTCAGCAAAACATCACGTGCCCTCT
CATAAGGGAGCTTCCGGAAAAACATCACCTGGCACAACGAGTGATCAGAG
AAACCAGAAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_f14.g1 MSMg01no542_f14.g1 CHROMAT_FILE:
MSMg01no542_f14.g1 PHD_FILE: MSMg01no542_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:21 2005
         (681 letters)



>mm_chr7_30878115_30879195
          Length = 1081

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/415 (98%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaactctggaagagcagtcggtgctcttaactgctaagccatctctccagctccctac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 417 aggaattctggaagagcagtcggtgctcttaactgctaagccatctctccagctctctac 358

                                                                       
Query: 61  agctattttctatcaaccctaacccttccccataaaagggactccaagagccaataagaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acctattttctatcaaccctaacccttccccataaaagggactccaagagccaataagaa 298

                                                                       
Query: 121 gcagctctctgaaatcctgacttcaggagaggcagcctacttgcgggcttaga-tttttt 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 297 gcagctctctgaaaccctgacttcaggagaggcagcctacttgcgggcttagattttttt 238

                                                                       
Query: 180 ttttttcaaaacctactttatttagggttcttaaacacttcaacttctcttctaatccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 ttttttcaaaacctactttatttagggttcttaaacacttcaacttcccttctaatccac 178

                                                                       
Query: 240 cgaccagaagcaagggagaaaggttaataggaaaagggagtcacagacccatttagaagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cgaccagaagcaagggagaaaggttaataggaaaagggagtcacagacccatttagaagt 118

                                                                       
Query: 300 agtttctcggggcaatcccactcttccttgtcaggattccagcagtccaggccaatagca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 agtttctcggggcaatcccactcttccttgtcaggattccagcagtccaggccaatagca 58

                                                                  
Query: 360 aacaccaaaaatgaatcagtagtggcggcaagatccagcagaaactgcaactggc 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aacaccaaaaatgaatcagtagtggcggcaagatccagcagaaactgcaactggc 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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