BAC Information

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BAC

Clone NameMSMg01-542J11
Chromosome7 (Build37)
Map Location 32,089,550 - 32,090,152
singlet/doubletsinglet
Overlap geneAbpe
Upstream geneClip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh
Downstream geneLOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J11.T7 (MSMg01no542_j11.b1)MSMg01-542J11.TJ (MSMg01no542_j11.g1)
ACCAG608328AG608329
length752781
length of high quality
(start - end)		49 (47 - 95)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no542_j11.b1 PHD_FILE: MSMg01no542_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:40 2005CHROMAT_FILE: MSMg01no542_j11.g1 PHD_FILE: MSMg01no542_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTTCTTTCCAGACTTTTATCATGAATGGGTGTTGGATCTTGT
CAATGTTTTCTCTGCATCTAACGAGATGTCATGTGGTTTTTGCTTTGATT
TTTTAATATGGGGAACCAACTTGAGGAATCAAAAATAAAACCTCCGCGCC
CCCGGNAAACTGGAGGATAGTTGGTCAAAACCAATACTAGGGNNNNTTGN
NNNCCCTTTTATATTCNNNAATANNNAAAAAATCTGTAGTTTTNNNNNNN
NAATATGTTTTNNNNNNNNNNNNTATNNNNNNNNTGNNNNNNNNNNNNNN
NNNNNNGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGTGGG
GGGGGGGGGGNNNNNCCTTNNNNNNTTTTNNNNNNNNNNNNTNNNNNGGG
GGGGGGGGGGGTCNNNNNNNNNNNNNGTTTTNNNNNNNNGGGGGAGCGGA
GGTGGGGGGGGGGGGGGTGGGGGGGGTNNNNANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGNNCGGGGGTGGGGGGGTAGGGGGANTTTAN
NNNNTNNNNCNNNNNNNNNNNNTTCTNNAATCTAAAAAAAANANNNNNNN
NGNGGGGGNNNNCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGGGGGGGCTGGGGGGGGGGGGGGGNNNNGGGGA
CG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGCAGCCTGGTCTACATATCAACA
AAAACAAGAAGGCTGCAATGGCTCTCTAAGCATCAACTGGCAGTCAGGGG
CAGTCACCCTGACCTCAGTGACTTCAGAAATCATTTCTCTCACTGTCTCT
CAGATCCTCTAAAGATTTCCCATGATTCCAGTACAGCACATAGACATGGG
ACACTGAACAGAGCTGCAGGCATTTATTAGAATCAGCCTAAGAGACTAAA
GGATGAAGGCACAGGTGTCAGGAATCCAACTTACAGAGAGAAAGAAAGGT
CAGCAAGATGGCACTCAGATCAGACACATTGCAAAGATGGGTTGCGTATA
ACCCATTAACTTCTATGGGTTAATTTCTTGGGAAACTTAACCAGAATGTT
CTTCAAGACTTCTTTGGTATAGTACGACCTGCATTCTGAGCTGAAGAGTA
TAGTTGTCTAGAAAACAAAGAGACAGACAGGGAGTGAGGTGGCTACAGAC
AAGGTGCAAGACCTCATCCACCCACAAAGAGACTGCTCCTCATCCACAGG
AAAGAAAATCCCATGCAGTGATTCAGATCTCCAGCAACAGACTCTCCCTC
AAGGGAACTGGAGCCCACCCACAACCTGAATGAGGAAACCTGAAAGCCAC
CATAGCCAGGCGGGGGAAGAAGGGGAGAAGGTTCTAGAAAGCATGATGGG
GGCTTCATCTTAATAGGGACAAGATAGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j11.g1 MSMg01no542_j11.g1 CHROMAT_FILE:
MSMg01no542_j11.g1 PHD_FILE: MSMg01no542_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:41 2005
         (625 letters)



>mm_chr7_32089128_32090152
          Length = 1025

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Minus

                                                                        
Query: 23   caacaaaaacaagaaggctgcaatggctctctaagcatcaactggcagtcaggggcagtc 82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 caacaaaaacaagaaggctgcaatggctctctaagcatcaactggcagtcaggggcagtc 966

                                                                        
Query: 83   accctgacctcagtgacttcagaaatcatttctctcactgtctctcagatcctctaaaga 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  accctgacctcagtgacttcagaaatcatttctctcactgtctctcagatcctctaaaga 906

                                                                        
Query: 143  tttcccatgattccagtacagcacatagacatgggacactgaacagagctgcaggcattt 202
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  cttcccatgattccagtacagcacatagacatgggacactgaacagagctgcaggcattt 846

                                                                        
Query: 203  attagaatcagcctaagagactaaaggatgaaggcacaggtgtcaggaatccaacttaca 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  attagaatcagcctaagagactaaaggatgaaggcacaggtgtcaggaatccaacttaca 786

                                                                        
Query: 263  gagagaaagaaaggtcagcaagatggcactcagatcagacacattgcaaagatgggttgc 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  gagagaaagaaaggtcagcaagatggcactcagatcagacacattgcaaagatgggttgc 726

                                                                        
Query: 323  gtataacccattaacttctatgggttaatttcttgggaaacttaaccagaatgttcttca 382
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 725  gtataacccattaacttctatgggttaatttcttggaaaacttaaccagaatgttcttca 666

                                                                        
Query: 383  agacttctttggtatagtacgacctgcattctgagctgaagagtatagttgtctagaaaa 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  agacttctttggtatagtacgacctgcattctgagctgaagagtatagttgtctagaaaa 606

                                                                        
Query: 443  caaagagacagacagggagtgaggtggctacagacaaggtgcaagacctcatccacccac 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  caaagagacagacagggagtgaggtggctacagacaaggtgcaagacctcatccacccac 546

                                                                        
Query: 503  aaagagactgctcctcatccacaggaaagaaaatcccatgcagtgattcagatctccagc 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  aaagagactgctcctcatccacaggaaagaaaatcccatgcagtgattcagatctccagc 486

                                                                        
Query: 563  aacagactctccctcaagggaactggagcccacccacaacctgaatgaggaaacctgaaa 622
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 485  aacagactctccctcaagggaactggagcccacccacaaccttaatgaggaaacctgaaa 426

               
Query: 623  gcc 625
            |||
Sbjct: 425  gcc 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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