BAC Information

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BAC

Clone NameMSMg01-542J22
Chromosome7 (Build37)
Map Location 53,953,954 - 53,954,595
singlet/doubletsinglet
Overlap geneSaal1
Upstream geneCar11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1
Downstream geneSaa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J22.T7 (MSMg01no542_j22.b1)MSMg01-542J22.TJ (MSMg01no542_j22.g1)
ACCAG608350AG608351
length716733
length of high quality
(start - end)		---649 (85 - 733)
definitionCHROMAT_FILE: MSMg01no542_j22.b1 PHD_FILE: MSMg01no542_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:43 2005CHROMAT_FILE: MSMg01no542_j22.g1 PHD_FILE: MSMg01no542_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAGAATTCCNCCCTANCCACTCCCATTTCCAANATCCCGNAATCCTCT
GTTACAGGCTGCCTCGATCCAAGAGATCACGGGGCCGGGCGCCGGAGGGC
GGGAGGATGAGGGATGCGGCGGCGCGGCTGGCTAGTGGGGAATGGGAATG
GATCGACTAAAAGCTTCTNNAATNATACCCCAAACTTCCTCCCACCCCCC
AAACCCCTTTNNATCTATAACAAACCTCCCACCCCCTTTTNTTCCCNNNT
TTAACCCCCCCCCCTNAAAAAAACACCTCCTCTAACCTTCCCCCCATTTT
CCCCCCCCCCANNCTCCCCCNNNTTTTTTTCTTTTTTTTTTTTTTTTTCA
AAANNNNTCCCCCNAAACCCCCCNNCCCCCCCCCCCCCTTTTAAAAAAAC
NCCCCCCCACAAAACCCCCCCCCCCCCCCCCCCNNNCNNTNCTCCCCCCC
CCCCCCCCCCCCCCAAAAAAANNNNNCCCCNAAACCCCCCCCCCCCCCCC
CNNCCNAACCACCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNTNNNC
CTTNCCCCTCCTCTTCCCCCCCCCCCCCCCCCCCTCTAAAAAACCCCAAA
AAAAAAACACCCCCCCCCCCCACCCCCCTCCCCCCCNNNNACCNNCCCCC
CCCCCCCTCCCTTTTCTTTACACCCCCCCCCCCCCCCCCCCCTTCCTTCC
TCCCATAAAAAAACAG

NTTAATAATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAACAAGACAG
GGAGGTGGATACAGCTCAGTGACAGGACGTCTACCTACGTGTGCAAGGCC
CCGTGCTGAACCCTGAGCACAGCAAAATCAAACTACAGGCAAGTCAATCA
AGATGCTGGAATCAAGATTAATATACAAATCATCAGCCTTCATAAAGCCC
AACAACAGTCAGTAGAACAAAGTATGTAACAGAGAACAGCTATTCAGAAG
ATAAAATGCCTAGGAACAAGCATAACATGCAAGGTGAGATGCAGAAACCG
AGTCTGAGATGGGCAGACCTGCCAATACCCTCCTCGACACTGCACACACT
CAACGCAGGCCCGATGAAGCATCGGCAAGCATTTGGGGCTGTGAACTCTT
CACCCTAATTCAGGATTAAACAAGTCAAAGCCAGACTGAAGAGACACCGT
CCTCACTCAGTATGGCTGACCCTCCGTGAGCACAGCAGTGGAATTAGTAG
ATTACAGAGGACTTTAGGAGGCACTCATGATAAGGCAGGGTGGTACCTCT
GGATGGAGCCACAGTTTGGTGCTGGGACTGGACGAGGAATGCATTCATGC
TCCCCATTAGAGCTGCACCCCGAGCCTCTCCTCAATGCCTTTTATAAACA
TCATTCTATGTTTGTATCTAATATTTTACATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j22.g1 MSMg01no542_j22.g1 CHROMAT_FILE:
MSMg01no542_j22.g1 PHD_FILE: MSMg01no542_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:43 2005
         (649 letters)



>mm_chr7_53953754_53954802
          Length = 1049

 Score = 1110 bits (574), Expect = 0.0
 Identities = 628/650 (96%), Gaps = 10/650 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaccaacaagacagggaggtggatacagctcagtgacaggacgtctacctacgtgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccaacaagacagggaggtggatacagctcagtgacaggacgtctacctacgtgtgc 260

                                                                       
Query: 61  aaggccccgtgctgaaccctgagcacagcaaaatcaaactacaggcaagtcaatcaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggccccgtgctgaaccctgagcacagcaaaatcaaactacaggcaagtcaatcaagat 320

                                                                       
Query: 121 gctggaatcaagattaatatacaaatcatcagccttcataaagcccaacaacagtcagta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gctggaatcaagattaatatacaaatcatcagccttcataaagctcaacaacagtcagta 380

                                                                       
Query: 181 gaacaaagtatgtaacagagaacagctattcagaagataaaatgcctaggaacaagcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacaaagtatgtaacagagaacagctattcagaagataaaatgcctaggaacaagcata 440

                                                                       
Query: 241 acatgcaaggtgagatgcagaaaccgagtctgagatgggcagacctgccaataccctcct 300
           ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 acatgcaagctgagacgcagaaaccgagtctgagatgggcagacctgccaatacactcct 500

                                                                       
Query: 301 cgacactgcacacactcaacgcaggcccgatgaagcatcggcaagcatttggggctgtga 360
           |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 501 cgacactgcacacactcaacgcaggcccgatgaagcatgggcaagcacttggggctatga 560

                                                                       
Query: 361 actcttcaccctaattcaggattaaacaagtcaaagccagactgaagagacaccgtcctc 420
           |||||||||||||| ||||||||||||||||||||||||||||       ||| ||||||
Sbjct: 561 actcttcaccctaactcaggattaaacaagtcaaagccagact-------cactgtcctc 613

                                                                       
Query: 421 actcagtatggctgaccctccgtgagcacagcagtggaattagtagattacagaggactt 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 actcagtatggctgatcctccgtgagcacagcagtggaattagtagattacagaggactt 673

                                                                       
Query: 481 taggaggcactcatgata-aggcagggtggtacctctggatggagccacagtttggtgct 539
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 674 taggaggcactcatgatacag-cagggtggtacctctggatggagccacagtttggtgct 732

                                                                       
Query: 540 ggg-actggacgaggaatgcattcatgctccccattagagctgcaccccgagcctctcct 598
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 733 ggggactggacgaggaatgcattcatgctccccattagagctgcaccctgagcctctcct 792

                                                             
Query: 599 caatgccttttataaacatcattctatgtttgtatctaatattttacatg 648
           ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 793 caatgccttttataaacattattctatgtttgtatctaatattttacatg 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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