Query= MSMg01no542_k16.b1 MSMg01no542_k16.b1 CHROMAT_FILE:
MSMg01no542_k16.b1 PHD_FILE: MSMg01no542_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:46 2005
(478 letters)
>mm_chr7_116744417_116745295
Length = 879
Score = 764 bits (395), Expect = 0.0
Identities = 401/403 (99%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 5 gaattctatgcttaaatatgttcactttttaaattggccccttatattgatttgttaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaattctatgcttaaatatgttcactttttaaattggccccttatattgatttgttaaga 548
Query: 65 agttacacacatatatcaggtgtggaccacatgtattattttttctcctttcccctcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agttacacacatatatcaggtgtggaccacatgtattattttttctcctttcccctcctt 488
Query: 125 tctcctgttgaacagattctttacataaaattaataaagtttattttactcttgtttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctcctgttgaacagattctttacataaaattaataaagtttattttactcttgtttttt 428
Query: 185 ttagtgagttgaggccccaacattcacattctcatagtatctgctatttatggtgtacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttagtgagttgaggccccaacattcacattctcatagtatctgctatttatggtgtacct 368
Query: 245 tagcagttaaaagcattttgcaacactaacaaaggaacactttcaatccagtcagtgaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagcagttaaaagcattttgcaacactaacaaaggaacactttcaatccagtcagtgaaa 308
Query: 305 gtggctgattgacaaccacatttacaaaccacaagtctccccagttctggaccctgctta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtggctgattgacaaccacatttacaaaccacaagtctccccagttctggaccctgctta 248
Query: 365 ttttctgctatcctagatggtgtactgatgcatta-ttttctg 406
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 247 ttttctgctatcctagatggtgtactgatgcattccttttctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k16.g1 MSMg01no542_k16.g1 CHROMAT_FILE:
MSMg01no542_k16.g1 PHD_FILE: MSMg01no542_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(460 letters)
>mm_chr7_116575823_116576676
Length = 854
Score = 824 bits (426), Expect = 0.0
Identities = 449/460 (97%), Gaps = 6/460 (1%)
Strand = Plus / Plus
Query: 1 catgaaaacattcaaaaatatgaactctctccccagaatctcaggcagtaaagttccctg 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 catgaaaacattcaaaaatatgaactctctccacagaatctcaggcagtaaagttcccta 260
Query: 61 agactcatggaagtcatcctaagtaagacttgctcacagcaaacaaactggagagaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactcatggaagtcatcctaagtaagacttgctcacagcaaacaaactggagagaattc 320
Query: 121 aagccagcctcaggagccggaacctcacaggtctcacagctaggtaggtgggaactgact 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccagcctcagga------acctcacaggtctcacagctaggtaggtgggaactgact 374
Query: 181 accacacaatgcccagcacctcaggggccaccagccttccagattcgatgcattttctgt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 375 accacacaatgcccagcacctcaggggccaccagccttccagattcaatgcattttctgt 434
Query: 241 agtgcttttgttatgaatctatgaactaatagttatgggttgagatgaccagttttcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtgcttttgttatgaatctatgaactaatagttatgggttgagatgaccagttttcaca 494
Query: 301 ataactaccagctcatgttaaaatactgagctacaagcaaactttttgcacatgcaatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ataactaccagctcatgttaaaatactgagctacaagcaaactttttgcacatgcaatgc 554
Query: 361 aaatgtgaagacgtagttcaatattctagaaacatcattagcacccatcaaacacttgct 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 555 aaatgtgaagacatagttcaatattctagaaacatcattagcacccatcaaacacttgtt 614
Query: 421 gaataaatatttataatagtttacattgctttctaaagag 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaataaatatttataatagtttacattgctttctaaagag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 854
Length adjustment: 10
Effective length of query: 450
Effective length of database: 844
Effective search space: 379800
Effective search space used: 379800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
