Query= MSMg01no542_m04.b1 MSMg01no542_m04.b1 CHROMAT_FILE:
MSMg01no542_m04.b1 PHD_FILE: MSMg01no542_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:54 2005
(654 letters)
>mm_chr7_122919220_122920273
Length = 1054
Score = 1228 bits (635), Expect = 0.0
Identities = 647/651 (99%), Gaps = 2/651 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaaggtatgtaactaaagagaaataatggtaaagttgattatccaatcacctc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaggtctgtaactaaagagaaataatggtaaagttgattatccaatcacctc 264
Query: 65 agtggtctccagaggcatcagtacatggaaacacagtggaattattaacatttataatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggtctccagaggcatcagtacatggaaacacagtggaattattaacatttataatgt 324
Query: 125 gatcaccttcagaaacatctcagatccacatagtttgcagtttataagagactttcatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcaccttcagaaacatctcagatccacatagtttgcagtttataagagactttcatat 384
Query: 185 tcattgtttgggttatttctcaaaatatttcaattgccatgttaaatacaaagaccacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattgtttgggttatttctcaaaatatttcaattgccatgttaaatacaaagaccacag 444
Query: 245 caacttttgaatcctgtggtttggaaaaactgagtgtatcagacagggctacagttccta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caacttttgaatcctgtggtttggaaaaactgagtgtatcagacagggctacagttccta 504
Query: 305 agttactgctgggtagcctggatcatcaaaagcatcaactacgtgccagcaatctgatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agttactgctgggtagcctggatcatcaaaagcatcaactacgtgccagcaatctgatta 564
Query: 365 gcatgacaagaacgtgagcaagactctttagtcagacttccacaaacatcaataaaagac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatgacaagaacgtgagcaagactctttagtcagacttccacaaacatcaataaaagac 624
Query: 425 gaacattaagtctttataagaataaattcaattagacgggaactacctgtcagtcaaagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaacattaagtctttataagaataaattcaattagacgggaactacctgtcagtcaaagt 684
Query: 485 cccctagagtgtcactaaggtctaaatctcaaaaactga-tgaaaaatccagggctaggt 543
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 685 cccctagagtgtcactaaggtctaaatctcaaaaact-agtgaaaaatccagggctaggt 743
Query: 544 cagggctgaagcacacagataaagaactcatgtacacactcactgtgataagcccacagc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cagggctgaagcacacagataaagaactcatgtacacactcactgtgataagcccacagc 803
Query: 604 gcattttctttaaatacagagtccactggaggctcctgtagaggagctgag 654
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcattttgtttaaatacagagtccactggaggctcctgtagaggagctgag 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_m04.g1 MSMg01no542_m04.g1 CHROMAT_FILE:
MSMg01no542_m04.g1 PHD_FILE: MSMg01no542_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:54 2005
(656 letters)
>mm_chr7_123058530_123059585
Length = 1056
Score = 1191 bits (616), Expect = 0.0
Identities = 631/636 (99%)
Strand = Plus / Minus
Query: 21 agctgtgccaactttccagtgctgccagttttgaagattgcctctgtgtggttttaaaag 80
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1056 agctgtgccaactttccagtgctgccagctttgaagattgcctctgtgtggttttaaaag 997
Query: 81 gtattatctaaggtgcttatgctcagaggagaaaagtactggttttagaagtgtactccc 140
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 996 gtattatctaaggtgtttatgctcagaagagaaaagtactggttttagaagtgtactccc 937
Query: 141 tctcacctctagctcataccatgggcataaagttttcacttattattatcagcaataata 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tctcacctctagctcataccatgggcataaagttttcacttattattatcagcaataata 877
Query: 201 ataataataataataataattgtgttgcaatccccaaaaatcttttgcttatgtacgctt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ataataataataataataattgtgttgcaatccccaaaaatcttttgcttatgtacgctt 817
Query: 261 cctattctgtattttaaaacctcagacttcatatacagtcactaacactgaattcttgtt 320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 816 cctattctgtattttaaaacctcagacttcatatacagtcagtaacactgaattcttgtt 757
Query: 321 atgtatttttctattgtacttctattttagtaaaacatgatatacttgaaggctattaat 380
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 756 atgtatttttctattgtacttctcttttagtaaaacatgatatacttgaaggctattaat 697
Query: 381 ttcctgtttttacttttagtgtttatctacatctttgtttgtaaagtaccagtaggcaac 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttcctgtttttacttttagtgtttatctacatctttgtttgtaaagtaccagtaggcaac 637
Query: 441 attctgagagtttgtcatttggagtaacttatctgataggaaccatgttatagatggttc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attctgagagtttgtcatttggagtaacttatctgataggaaccatgttatagatggttc 577
Query: 501 ttaggaaacttcccaagtctcattacctcatcctgtattacgaaacttcatagaaaccta 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttaggaaacttcccaagtctcattacctcatcctgtattacgaaacttcatagaaaccta 517
Query: 561 ctgttaaatggtcaaacactcttactttaaagtctagctttcataacattcttctgatag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgttaaatggtcaaacactcttactttaaagtctagctttcataacattcttctgatag 457
Query: 621 tgtctggtagaacatctgactagagcttcctgcact 656
||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgtctggtagaacatctgactagagcttcctgcact 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
