Query= MSMg01no543_d08.b1 MSMg01no543_d08.b1 CHROMAT_FILE:
MSMg01no543_d08.b1 PHD_FILE: MSMg01no543_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:30 2005
(549 letters)
>mm_chr7_122117889_122118837
Length = 949
Score = 1000 bits (517), Expect = 0.0
Identities = 542/551 (98%), Gaps = 2/551 (0%)
Strand = Plus / Plus
Query: 1 tcactacaattcaagaagcgcttttgtttctgtaaccaaaaagattcttgcagtgtctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcactacaattcaagaagcgcttttgtttctgtaaccaaaaagattcttgcagtgtctat 258
Query: 61 gtgcatttttaagaatgctttttctttttcaaaaaacattattattttcttattatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgcatttttaagaatgctttttctttttcaaaaaacattattattttcttattatttta 318
Query: 121 --tgtttgggtattttgtctgtacacgtgcctgtacaccacatgtgtatctggtgcctat 178
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 319 tgtgtttgggtattttgtctgtacacgtgcctgtataccacatgtgtacctggtgcctat 378
Query: 179 ggaatccagaatagggtcttagatcccctggaactggagttacagatcatcgtgagccaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggaatccagaatagggtcttagatcccctggaactggagttacagatcatcgtgagccaa 438
Query: 239 ggggtggctgctgggaattgaacctggcttctctagaagagaaggaagcactcttaacta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggggtggctgctgggaattgaacctggcttctctagaagagaaggaagcactcttaacta 498
Query: 299 ctactgccaaggtagcccaatgtgtatattttggtagaggaatgaaagagagtaattcta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctactgccaaggtagcccaatgtgtatattttggtagaggaatgaaagagagtaattcta 558
Query: 359 gaactttctcggaaggcagtatagggaatcataggcctgttccatattttccaacagaga 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaactttctcggatggcagtatagggaatcataggcctgttccatattttccaacagaga 618
Query: 419 catcatctttgtgtgaacttgtgtgggaagaacagagaaagatctccctctgaaagcttc 478
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 tatcatctttgtgtgaagttgtgtgggaagaagagagaaagatctccctctgaaagcttc 678
Query: 479 acactgtctctctgatgtggtactcactggactgccccaggaggatatgcggagcacttt 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atactgtctctctgatgtggtactcactggactgccccaggaggatatgcggagcacttt 738
Query: 539 tgctgtatcag 549
|||||||||||
Sbjct: 739 tgctgtatcag 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_d08.g1 MSMg01no543_d08.g1 CHROMAT_FILE:
MSMg01no543_d08.g1 PHD_FILE: MSMg01no543_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:30 2005
(566 letters)
>mm_chr7_122287574_122288537
Length = 964
Score = 1052 bits (544), Expect = 0.0
Identities = 557/562 (99%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 1 tcagtatgtgtcagacactggtgacatgctgtgccctccttggtgggggtgaagtccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tcagtatgtgtcagacactggtgacatgctgtgccctccttggtgggggtgaagtccaga 701
Query: 61 gcagatcaataaccaaacacaagtgcacaagtatgtgatagaggaaaaagtgggtacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gcagatcaataaccaaacacaagtgcacaagtatgtgatagaggaaaaagtgggtacatg 641
Query: 121 taaacttggcttgaccttcagaggtggtatgggtctggctgtgaatggctccctaaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taaacttggcttgaccttcagaggtggtatgggtctggctgtgaatggctccctaaacca 581
Query: 181 gaaatgcttaagctgaaacatacaattatacttctccaggaaatggagtaggcatgtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaaatgcttaagctgaaacatacaattatacttctccaggaaatggagtaggcatgtatg 521
Query: 241 tgtgtggcaggctgtgaggggagaagaggggacaattttcaaacagaggtatctgggagt 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 tgtgtggcaggctgtgaggggagaaga--ggacaattttcaaacagaggtatctgggagt 463
Query: 301 acctgatattggagggcgagaggaaactgtgctcatgtgttttgaatgatgtagagtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acctgatattggagggcgagaggaaactgtgctcatgtgttttgaatgatgtagagtaaa 403
Query: 361 agatgagaaggaggagagaacaggctagcaatgcagacagtaacacccaaggctggacta 420
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 402 agatgagaaggaggagagaacaggctagcagtgcagacagtagcacccaaggctggacta 343
Query: 421 tgggggacactgtaagtcatcttttggagtctgagatttatcttgcagctttatagtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgggggacactgtaagtcatcttttggagtctgagatttatcttgcagctttatagtgtg 283
Query: 481 gctaacagactttaaactgaggaataacatggctagctttgcaatagaggtgtggaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gctaacagactttaaactgaggaataacatggctagctttgcaatagaggtgtggaaaac 223
Query: 541 ataccatggaggcagagagggg 562
|||||| |||||||||||||||
Sbjct: 222 ataccagggaggcagagagggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 964
Length adjustment: 10
Effective length of query: 556
Effective length of database: 954
Effective search space: 530424
Effective search space used: 530424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
