BAC Information

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BAC

Clone NameMSMg01-543F16
Chromosome7 (Build37)
Map Location 84,208,371 - 84,376,781
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F16.T7 (MSMg01no543_f16.b1)MSMg01-543F16.TJ (MSMg01no543_f16.g1)
ACCAG608909AG608910
length766760
length of high quality
(start - end)
588 (71 - 658)505 (165 - 669)
definitionCHROMAT_FILE: MSMg01no543_f16.b1 PHD_FILE: MSMg01no543_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:42 2005CHROMAT_FILE: MSMg01no543_f16.g1 PHD_FILE: MSMg01no543_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:42 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(84,208,371 - 84,208,958)(84,376,277 - 84,376,781)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGGTGTATGCTCTGAATAGAGACCTGTTACTTACTGAATGTGCA
GAGGGGCTCAGTGTCTAGAGAGAGAATGACAATCTGAAAATACTTTTTCT
TTGCTGTTCTTAGTTGTAAAGGAGACTGAAAAAAAAAGATGACTAGTGTA
AAATTTCAAATGATTCCACTTTATGAAATATTAGTGTTGCATGGGTCCAG
TTCACACCAATGTCTGTGCTTTGCTTCATCAAATTGCTGGTCCCTGGAAG
GGCCCCTAAGAATGGTTTTCACTGGATGTTGCAGAAACTAGGTTGCTGTG
CACACAGGGAGTATATCCGGCATAATAACTAAGCATTTCCACCGCTAGAA
AGGTTGCAAACAAATCAGTGAGGGGCTACAGAATGCAAATCAGAATTGCC
AGCAGGCATGGAATCCAAGGGCATTTGTTACGCATAACAAAAGGTTAGAA
AAACAAGGTCATGGCCTCCAACAATTCTTCCCTTTTGGGCCAATATTATG
CAAATTACAAGGAAATATCAGGGTAGCAGGTTCTAGGAGAATGAAATTGC
TGAATGTGGATAGACTTTATTTCAGATGAAAATGGAACTAAGTGTGAAAT
GGAAAAGAAAAGAAAATTCAGTTCTGGGCAGTTTTTGTTCCCAAGCTTCA
AGGTGCATGGCACAGTATCAGTTGGGCTTCTTGTTTGGGACCAACCGTGG
CTAGTCACATTTGCCN
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCATTGTCAGAAACATTAAACTAATTCAGGC
TCCAGGAATGTGCCCAACAGTATTATGAAGCANATCCAAGTGGTCTTGGT
TAGAAAATAAGAATTAGAACCACAGCATATAGTACAAGGTTGAAAATTAG
ACATTCAAAATCAAAGGGAAAGTAGTAAGTCAATTATCTCCCAGCTCAGA
ATCTTAGAGCATCAAAGTGCAGTGGTAAGAAGAGATGTGAGACACCCAAG
GGCAATTGGCTCCCTGTAGGTAAGTGTGTATTTCCAACCGTAGTGAACTG
ATGGAATCTGATGCATTTTAATTTCCCATTTCACTATTTATTTAGCTTCC
AATTTGGTCTGCTCTATTGCTCAAAATGCTAATGTTTTCTATTGACCAAA
TTGAACATAATTAGGATAGTATATAAAAGTGGTTCCACCCTGTGTTAGCA
TCAGTGTTTTAATGGAGGAAATGACAAGGTCCAACCTCAGATAACTTTAA
GCAGTCTCTCCTTTGGTCCCCAGCCATCCATCATTACCTTTTACATCAGT
GGAATGTAAGGTTCACTTACCAGTTGACTTTAAGTAATTTCCTTCAAGTT
CAAGTATTTTATCTTGTTAGAACTCCAGTCTTAATGGTACTGCATTATAT
GTTCAGTATTTAAGGTTAAATAAATTTTTCTTAACTATTTTCATATGTAT
ATTTTTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f16.b1 MSMg01no543_f16.b1 CHROMAT_FILE:
MSMg01no543_f16.b1 PHD_FILE: MSMg01no543_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:42 2005
         (588 letters)



>mm_chr7_84208171_84209158
          Length = 988

 Score = 1098 bits (568), Expect = 0.0
 Identities = 583/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagagacctgttacttactgaatgtgcagaggggctcagtgtctagagagagaatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagagacctgttacttactgaatgtgcagaggggctcagtgtctagagagagaatgac 260

                                                                       
Query: 61  aatctgaaaatactttttctttgctgttcttagttgtaaaggagactgaaaaaaaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctgaaaatactttttctttgctgttcttagttgtaaaggagactgaaaaaaaaagat 320

                                                                       
Query: 121 gactagtgtaaaatttcaaatgattccactttatgaaatattagtgttgcatgggtccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactagtgtaaaatttcaaatgattccactttatgaaatattagtgttgcatgggtccag 380

                                                                       
Query: 181 ttcacaccaatgtctgtgctttgcttcatcaaattgctggtccctggaagggcccctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacaccaatgtctgtgctttgcttcatcaaattgctggtccctggaagggcccctaag 440

                                                                       
Query: 241 aatggttttcactggatgttgcagaaactaggttgctgtgcacacagggagtatatccgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 aatggttttcactggatgttgcagaaactaggttgctgtgcacacagggagtatatctgg 500

                                                                       
Query: 301 cataataactaagcatttccaccgctagaaaggttgcaaacaaatcagtgaggggctaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataataactaagcatttccaccgctagaaaggttgcaaacaaatcagtgaggggctaca 560

                                                                       
Query: 361 gaatgcaaatcagaattgccagcaggcatggaatccaagggcatttgttacgcataacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgcaaatcagaattgccagcaggcatggaatccaagggcatttgttacgcataacaa 620

                                                                       
Query: 421 aaggttagaaaaacaaggtcatggcctccaacaattcttcccttttgggccaatattatg 480
           || ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 621 aatgttagaaaaacaaggtcatggcctccaacaattcttttcttttgggccaatattatg 680

                                                                       
Query: 481 caaattacaaggaaatatcagggtagcaggttctaggagaatgaaattgctgaatgtgga 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 caaattacaaggaaatatcagggtatcaggttctaggagaatgaaattgctgaatgtgga 740

                                                           
Query: 541 tagactttatttcagatgaaaatggaactaagtgtgaaatggaaaaga 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagactttatttcagatgaaaatggaactaagtgtgaaatggaaaaga 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_f16.g1 MSMg01no543_f16.g1 CHROMAT_FILE:
MSMg01no543_f16.g1 PHD_FILE: MSMg01no543_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:42 2005
         (505 letters)



>mm_chr7_84376077_84376981
          Length = 905

 Score =  977 bits (505), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaccacagcatatagtacaaggttgaaaattagacattcaaaatcaaagggaaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tagaaccacagcatatagtacaaggttgaaaattagacattcaaaatcaaagggaaagta 646

                                                                       
Query: 61  gtaagtcaattatctcccagctcagaatcttagagcatcaaagtgcagtggtaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtaagtcaattatctcccagctcagaatcttagagcatcaaagtgcagtggtaagaagag 586

                                                                       
Query: 121 atgtgagacacccaagggcaattggctccctgtaggtaagtgtgtatttccaaccgtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atgtgagacacccaagggcaattggctccctgtaggtaagtgtgtatttccaaccgtagt 526

                                                                       
Query: 181 gaactgatggaatctgatgcattttaatttcccatttcactatttatttagcttccaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaactgatggaatctgatgcattttaatttcccatttcactatttatttagcttccaatt 466

                                                                       
Query: 241 tggtctgctctattgctcaaaatgctaatgttttctattgaccaaattgaacataattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tggtctgctctattgctcaaaatgctaatgttttctattgaccaaattgaacataattag 406

                                                                       
Query: 301 gatagtatataaaagtggttccaccctgtgttagcatcagtgttttaatggaggaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gatagtatataaaagtggttccaccctgtgttagcatcagtgttttaatggaggaaatga 346

                                                                       
Query: 361 caaggtccaacctcagataactttaagcagtctctcctttggtccccagccatccatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caaggtccaacctcagataactttaagcagtctctcctttggtccccagccatccatcat 286

                                                                       
Query: 421 taccttttacatcagtggaatgtaaggttcacttaccagttgactttaagtaatttcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 taccttttacatcagtggaatgtaaggttcacttaccagttgactttaagtaatttcctt 226

                                    
Query: 481 caagttcaagtattttatcttgtta 505
           |||||||||||||||||||||||||
Sbjct: 225 caagttcaagtattttatcttgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)