BAC Information

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BAC

Clone NameMSMg01-543G01
Chromosome7 (Build37)
Map Location 99,066,612 - 99,066,856
singlet/doubletsinglet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543G01.T7 (MSMg01no543_g01.b1)MSMg01-543G01.TJ (MSMg01no543_g01.g1)
ACCAG608927AG608928
length759748
length of high quality
(start - end)
245 (77 - 321)667 (82 - 748)
definitionCHROMAT_FILE: MSMg01no543_g01.b1 PHD_FILE: MSMg01no543_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:44 2005CHROMAT_FILE: MSMg01no543_g01.g1 PHD_FILE: MSMg01no543_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAACAGATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATAAATATTTGGCCACTGCCTTCAAAAACTTGCTTGTC
CAATGAGCTATCTTTAGTCTAAATGTATTTTTAAAAAAATTACATTGGGC
AGCCTGCTTCCTTCCTGCCGCCCACTTTCTCCCTCACAAAAAAAATAAAA
TAAAATAAAATCATCCTAGCCTTAAGATCTTATTTGAATTTTTCTGACTT
TTTCATCCTCTCAGCCATTATTTCAACAAGGATGGTCATCCCCATATTAA
AAATCACTCTGATGTTGCTCATACATTTTAATACAGGGCAAAAGGATGCC
CACTCCATTGACACTCCTTATCTCCGGCATAGAGGAAAGCGAGACTTTGC
TCCCACTCAGATTAACAACTTCGTCCTTTAGCTTGGCCATCCCAGTGGTG
TTTCTAGTCAAGACAGAGGCCTGATATTTTCCAAAGACTCTTGTGTACAA
TCATTCCTTCTCATAGTTCTACTCACCAAGCATGCATTATTGGATTAAAG
CCATACGATTCACTGTTGCCCTTATGCTGTATTCTATTATGGTTGTCCTC
CCTCCACATTTCCTTATTAAGAGACCCTTAATACCGCTCGATGCCTCAGG
GATGTGGCCCATCTTAGCCCCCGCTATTTTTCATTTGATTACTTTGTCTC
CAAAAATACGGCTTGCATTTGTTAATAACTCTTAATTGAATTTCACCTGT
TCATCACCG
GGCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGACCAGAAGTTATAG
ATAGTTGCAAGCTGCCATGTGGGTGCTGGGAATTGAACCTGGGACCTCTG
GAAGAGCACCCAGTACTCTTAACCACTGAGCTATCTCTCTAGCCCCTGAC
AACCCACACTTTTTTTTTAATTATTAGATATTTTCTTTATTTACATTTCA
AATGCTATCCCGAAAGTTCCCTATACTCTTCCCCACCCTGCTCCCCTACC
CACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA
AAGTTTGCAAGACCAAGGGACCTCTCTTCCCAATGGTGGCCAACTAGGCC
ATCTTCTGCTACATATTCAGGTAGAGACACGAGCTCTGGGGGTACTGGTT
AGTTCATATTGTTGTCACTCCTATAGGTTTGCAGACCGCTTCAGCTCCTT
GGGTACTTTCTCTAGCTCCTCCATTGGTGGCCCTGTGTTCCATCCAATAG
ATGCAATAGATGCCTGTGATCATCCACTGCTGTATTTGCCAGGCACTGGC
ATAATCTCACATGAGTCAGCTATATCAGGGTCCTTTCAGCAAAATTTTGC
TGGCATATGCAATAGTATCTGCAACCCACACCTTTTAAGAAGAGAATAAG
CTATAAGCTGATTTAAAAGAAAAATCAAATTTTTACTTATGTAGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_g01.b1 MSMg01no543_g01.b1 CHROMAT_FILE:
MSMg01no543_g01.b1 PHD_FILE: MSMg01no543_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:44 2005
         (245 letters)



>mm_chr7_99066412_99067056
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgccttcaaaaacttgcttgtccaatgagctatctttagtctaaatgtatttttaaaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 actgccttcaaaaacttgcttgtccaacgagctatctttagtctaaatgtatttttaaaa 260

                                                                       
Query: 61  aaattacattgggcagcctgcttccttcctgccgcccactttctccctcacaaaaaaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaattacattgggcagcctgcttccttcctgccgcccactttctccctcacaaataaaat 320

                                                                       
Query: 121 aaaataaaataaaatcatcctagccttaagatcttatttgaatttttctgactttttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaataaaataaaatcatcctagccttaagatcttatttgaatttttctgactttttcat 380

                                                                       
Query: 181 cctctcagccattatttcaacaaggatggtcatccccatattaaaaatcactctgatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cctctcagccattatttcaacaaggatggtcatccccatattaaaaagcactctgatgtt 440

                
Query: 241 gctca 245
           |||||
Sbjct: 441 gctca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)