BAC Information

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BAC

Clone NameMSMg01-543N20
Chromosome7 (Build37)
Map Location 5,806,461 - 5,807,063
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
Downstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543N20.T7 (MSMg01no543_n20.b1)MSMg01-543N20.TJ (MSMg01no543_n20.g1)
ACCAG609299AG609300
length762758
length of high quality
(start - end)		574 (47 - 620)613 (78 - 690)
definitionCHROMAT_FILE: MSMg01no543_n20.b1 PHD_FILE: MSMg01no543_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:21 2005CHROMAT_FILE: MSMg01no543_n20.g1 PHD_FILE: MSMg01no543_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAATTTCTTTCTTTATTTCTTTCCTTGCCAAGTTGCCATTGA
GTAAAGAATTGTTCAGGTTCCATGTGTATGTGGACTTTCTGCAGTTTTTG
CTGTTACTGAAGGTCAACCTTAGACCATGGTGGTCTGATAGGATGCATGG
TATTATTTCTATCTTCTTGTATCCATTGAGGATTATTTTTTTTCCATTTT
TATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCC
CATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCC
CTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC
TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCT
AGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTA
TAGGGTTGCAGATCCCTTTAGCTCCTTGTGGAATTTCTCTAGCTCCTCCA
TTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTG
TGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACATCTGCGTC
CTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGC
TGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCT
TTCATCTCAGCT

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATGGAACCTAGATGCAGAA
ACTAAAGGACAAACATTGGTGATATGTGATTTACTCTACTGGTCCCTGGG
ACTTGTCCAGCCTGCTTTCTTACAGCTCCAGGATTGCCAGCCCTGGGGAT
GGCATCACTCACAGTCATCAAGGTCCTGCAGATCAATCCTCAATCAAAAA
ATACACCACAAGCTTGTTCACAAACCTATATTCTGGTTCCCTATTGTCAA
ATGCCTATATTTTGGATCAGACACATTGACAGTACAAAAAGTCAGCTTTC
TTCTTTGGATTGTCACTTCAGTTTTTACTTTCATCATGAAAATCAAAACT
GAGGCCATCGATTTCTATTTGACCTAGCGGGCGAGTTTTGTTTTGTTTTT
CATGTTAATTCTGCCTTTTTTCTAATTTAGATTATCTATTGCTAGATTTT
TACATAGTGTGAAATTCTTAACATTTCAGTTATCAGTGAATACCAGGTTG
TATTCGCTACATAATGGAAGCTGCCTAAAATGATACTGTAGTGAAAACGA
CTATTTAACAACCATGTGAGCTACTGCATGCTTTTTGATTAATCATTCCA
TTCATTTATATCCCACATGATATCATCCTTCCTCGTTTCACCTCCCAAAC
CCTCCCATATCATATCAAAACTCTCCCCCTTTCAATGTGCCTCTATGAAA
GTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_n20.g1 MSMg01no543_n20.g1 CHROMAT_FILE:
MSMg01no543_n20.g1 PHD_FILE: MSMg01no543_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:21 2005
         (613 letters)



>mm_chr7_5806257_5807268
          Length = 1012

 Score =  658 bits (340), Expect = 0.0
 Identities = 540/614 (87%), Gaps = 25/614 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaacctagatgcagaaactaaaggac-aaacattggtgatatgtgatttactctactgg 65
           |||||||||| |||||||||||||||| |||       ||||||||||||| | ||||||
Sbjct: 205 ggaacctagaggcagaaactaaaggactaaa-------gatatgtgatttattgtactgg 257

                                                                       
Query: 66  t-ccctgggacttgtccagcctgctttcttacagc-tccaggattgccagccctggggat 123
           | ||| ||| |||| |||||||||||||||||||| |||||| || ||||||| ||||||
Sbjct: 258 tccccaggg-cttgcccagcctgctttcttacagcatccaggtttaccagcccaggggat 316

                                                                       
Query: 124 ggcatcactcacagtcatcaaggtcctgcagatcaatcctcaatcaaaaaatacacca-c 182
           |||||||| ||||||||||| ||||||||| |||||||| |||||||||| |||| || |
Sbjct: 317 ggcatcacccacagtcatcatggtcctgcacatcaatccccaatcaaaaactaca-cagc 375

                                                                       
Query: 183 aagcttgttcacaaacctatattctggttccctattgtcaaatgcctatattttggatca 242
           |||||||||| |||||||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 376 aagcttgttcgcaaacctatattctggttccttgttgtcaagtgtctatattttggatca 435

                                                                       
Query: 243 gacacattgacagt--acaaaaagtcagctttcttctttggattgtcacttcagttttta 300
           ||||||||| ||||  | |||||||||| || ||||||||||||| |||||||||| |||
Sbjct: 436 gacacattgccagtaaaaaaaaagtcagattccttctttggattgacacttcagttctta 495

                                                                       
Query: 301 ctttcatcatgaaaatcaaaactgaggccatcga-tttctatttgaccta--gcgggcg- 356
           ||||||||||| |||||||||||||||||||| | ||||||||| |||||  | | ||| 
Sbjct: 496 ctttcatcatggaaatcaaaactgaggccatc-attttctatttcacctaatgagagcgt 554

                                                                       
Query: 357 --agttttgttttgtttttcatgttaattctgccttttttctaatttagattatctattg 414
              ||||||||||||||||||||||||||||| |||||  ||||||| | || |||||||
Sbjct: 555 tttgttttgttttgtttttcatgttaattctggcttttccctaattt-ggttgtctattg 613

                                                                       
Query: 415 ctagatttttacatagtgtgaaattcttaacatttcagttatcagtgaataccaggttgt 474
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 614 atagatttttacatagtgtgaaattcttaacatttcagttgtcagtgaataccaggttgt 673

                                                                       
Query: 475 attcgctacataatggaagctgcctaaaatgatactgtagtgaaaacgactatttaacaa 534
           ||| ||||||||||| |||||||||||  | |||||||||||||||| ||||||||||||
Sbjct: 674 attagctacataatgtaagctgcctaaggtaatactgtagtgaaaacaactatttaacaa 733

                                                                       
Query: 535 ccatgtgagctactgcatgcttt--ttgattaatcattccattcatttatatcccacatg 592
           ||| ||||| |||||||||||||  || ||||||||||||||||||||| |||||| |||
Sbjct: 734 ccacgtgaggtactgcatgctttcttttattaatcattccattcatttacatcccaaatg 793

                         
Query: 593 atatcatccttcct 606
           |||||  |||||||
Sbjct: 794 atatcccccttcct 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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