BAC Information

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BAC

Clone NameMSMg01-544A21
Chromosome7 (Build37)
Map Location 58,694,700 - 58,695,015
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
Downstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544A21.T7 (MSMg01no544_a21.b1)MSMg01-544A21.TJ (MSMg01no544_a21.g1)
ACCAG609443AG609444
length747750
length of high quality
(start - end)		682 (52 - 733)580 (80 - 659)
definitionCHROMAT_FILE: MSMg01no544_a21.b1 PHD_FILE: MSMg01no544_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:36 2005CHROMAT_FILE: MSMg01no544_a21.g1 PHD_FILE: MSMg01no544_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCAAAACTCTATCCCTGATGGGCTTTTCAATGCCATGCCTTCA
GTGGAGGGCTGTGGTAACCTCCAGACTAATTCTAGTTTTACATTAGTTCT
CATTTTTCTCAGTTCAGGGATGTCACTTTTGGATAGTCACCAAACACCTC
TCACCTTTTTTTCTTTGGAAAATAGTGATGATAAATTTACCAACCTCTGC
TCTCATGAGAATTAAATGCACAGTATATATTAAAGAAGAGGCACTCTCCT
GATTTATAGTTTTGTTCAGTATCATTTCTTTTTAAAGATTATTAAAAGCA
AACGTCCAGCAGTATTGATCTACAGGTATAGATTAAGAGTAGTTTTATTG
CTATGTTCATTTAGCACTGCAGTTCTCAACCTGTGGGTTGCATATCAGAT
ATCTTGCATATCAAGATGTTTACATTATGATTAATAGCAGTAGCAAAATT
ACACCTATGAAATAGCAACAAAAATAATTTTATGGTTGGGTACACCACAA
CATGAGCAACTGCATTAGCAAGTTGCAGCATTTGAAAGGCTGAGAATCAT
TGATTTAGCAGAATATTAATAGTGGGGCCTCTGTGGCCTATGGCCTATCT
AGTTTCAAGGGTTTGGTCTCATTAACAGTGTCAGGAATGGGTTACATATC
ATGGAGAGGTCCAATCAAAAAGTATTTGGCTACTNCCATAATATTTT

NNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCAGCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGA
TAAGTGGATATTAGCCCCAAACCTAGGATACCCAATATATAAGATATAAT
TTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_a21.b1 MSMg01no544_a21.b1 CHROMAT_FILE:
MSMg01no544_a21.b1 PHD_FILE: MSMg01no544_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
         (682 letters)



>mm_chr7_58694697_58695778
          Length = 1082

 Score =  538 bits (278), Expect = e-157
 Identities = 305/316 (96%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcaaaactctatccctgatgggcttttcaatgccatgccttcagtggagggctgtg 62
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattcaaaactctaaccatgatgggcttttcaatgccatgccttcagtggagggctgtg 260

                                                                       
Query: 63  gtaacctccagactaattctagttttacattagttctcatttttctcagttcagggatgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtaacctccagactaattctagttttacattagttctcatttttctcagttcagggatgt 200

                                                                       
Query: 123 cacttttggatagtcaccaaacacctctcaccttttt----ttctttggaaaatagtgat 178
           ||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||
Sbjct: 199 cacttttggatagtcaccaaacacctctcacctttgtatccttctttggaaaatagtgat 140

                                                                       
Query: 179 gataaatttaccaacctctgctctcatgagaattaaatgcacagtatatattaaagaaga 238
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gataaatttaccagcctgtgctctcatgagaattaaatgcacagtatatattaaagaaga 80

                                                                       
Query: 239 ggcactctcctgatttatagttttgttcagtatcatttctttttaaagattattaaaagc 298
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 79  ggcactctcctgatttatagttgtgttcagtatcatttctttttaaagattattaaaagc 20

                           
Query: 299 aaacgtccagcagtat 314
           ||| ||||||||||||
Sbjct: 19  aaatgtccagcagtat 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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