Query= MSMg01no544_a23.b1 MSMg01no544_a23.b1 CHROMAT_FILE:
MSMg01no544_a23.b1 PHD_FILE: MSMg01no544_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
(590 letters)
>mm_chr7_96795172_96796161
Length = 990
Score = 499 bits (258), Expect = e-145
Identities = 295/314 (93%), Gaps = 13/314 (4%)
Strand = Plus / Minus
Query: 1 agagctgaattggctattgggaggttgggtctagttggagaagatcatcactgagcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agagctgaattggctattgggaggttgggtctagttggagaagatcatcactgagcttgt 246
Query: 61 ggcgttgaaggccatttcttagccctaaatagatactctctctctctcactctttctctt 120
||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 245 ggcgttgaaggccatttcttagccctaaacagata--------ctctcactctttctctt 194
Query: 121 gtttacgttgctgtgtgcatttgtgtgtgtgtgtccacatacatgtgtcccatggcacac 180
||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 193 gttcactttggtgtgtgcatt----tgtgtgtgtccacatacatgtgtcccatggcacac 138
Query: 181 a-gtagtgatgaaaagacaacttgaggcagtgagttctcttcttccaccatgtaggtact 239
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atgtagtgattaaaagacaacttgaggcagtgagttctcttcttccaccatgtaggtact 78
Query: 240 gggacttacactcagttctagtttggcagcatcatcttaacctgctgagtcatctcacaa 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 77 gggacttacactcagttctagtttggcagcatcatcttaacctgctgaatcatctcacaa 18
Query: 300 attctctctctctc 313
||||||||||||||
Sbjct: 17 attctctctctctc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_a23.g1 MSMg01no544_a23.g1 CHROMAT_FILE:
MSMg01no544_a23.g1 PHD_FILE: MSMg01no544_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
(663 letters)
>mm_chr7_96619732_96620794
Length = 1063
Score = 1162 bits (601), Expect = 0.0
Identities = 654/687 (95%), Gaps = 25/687 (3%)
Strand = Plus / Plus
Query: 1 ataagctctttgctcttttacttcttgccagtgaagagtctttgagtgacataaaaaggc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagctctttgcttttttacttcttgccagtgaagagtctttgagtgacataaaaaggc 260
Query: 61 acaatgagtttttagcaaagatgctcttagcttggtcgatacatttatctggcatgttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgagtttttagcaaagatgctcttagcttggtcgatacatttatctggcatgttaa 320
Query: 121 cagcttgcctatatatgatctttcagatcaaaagaaaaatctcaatcacttactactctc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcttgcctatatgtgatctttcagatcaaaagaaaaatctcaatcacttactactctc 380
Query: 181 tggatgtcaggtggcttggggttactttatccagtaagatgctgcagaagagaggctaag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatgtcaggtggcttggagttactttatccagtaagatgctgcagaagagaggctaag 440
Query: 241 ctcaatttcagccttgtttactgaactaaactccaatgtacacaaactccaattagtccg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ctcaatttcagccttgtttactgaactaaactcctatgtacacaaactccaattagtccg 500
Query: 301 gggacagccatgttggaggaattcctaaccacaaagaggagacatgtgttctggttgcta 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 gggacagccatgttggaggaattcctaaccacaaggaggagacatgtgttctggttgcta 560
Query: 361 tcacagttgaactcagccttcaagtcacaccaatccaggcatgagatggcatgtaagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacagttgaactcagccttcaagtcacaccaatccaggcatgagatggcatgtaagtga 620
Query: 421 agaagctaccaggtgtttcagtctattgtacacttgttatttgcattccagataaggctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagctaccaggtgtttcagtctattgtacacttgttatttgcattccagataaggctt 680
Query: 481 aggccgttgtggggcaaatataaaccatcttcattgtaatctgtcctaattaatgattgg 540
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggccattgtggggcaaatataagccatcttcattgtaatctgtcctaattaatgattgg 740
Query: 541 cagaattcacaggcataatatt------------------------atggtttttatttt 576
|||||||||||||||||||||| || ||||||||||
Sbjct: 741 cagaattcacaggcataatattttttttatttttatactttttaaaata-tttttatttt 799
Query: 577 tacactttgaggtaatttgtttgcattaataacactagtcagtcaggactcattgggtca 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tacactttgaggtaatttgtttgcattaataacactagtcagtcaggactcattgggtca 859
Query: 637 caagtcatgaaaacaacatgcatacta 663
|||||||||||||||||||||||||||
Sbjct: 860 caagtcatgaaaacaacatgcatacta 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
