BAC Information

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BAC

Clone NameMSMg01-544B01
Chromosome7 (Build37)
Map Location 28,813,337 - 28,813,844
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772
Downstream genePsmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544B01.T7 (MSMg01no544_b01.b1)MSMg01-544B01.TJ (MSMg01no544_b01.g1)
ACCAG609451AG609452
length749762
length of high quality
(start - end)		511 (182 - 692)78 (234 - 311)
definitionCHROMAT_FILE: MSMg01no544_b01.b1 PHD_FILE: MSMg01no544_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:36 2005CHROMAT_FILE: MSMg01no544_b01.g1 PHD_FILE: MSMg01no544_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAAGGGAGAGACGGGATATGGGTCAGTGGTAGAGCACCTT
TCCTAAGGTGGAGCTGGAAGTGTGGAATGAACAAGGCTTTGGGTTCCCAT
CCTCTGTACAAGTTAGTTCGGAGGAGAAGAACATGAAGGATCTTATAAGG
GGAATCACTTGTAAGGGCTAAAGTTAACCTGTAAGCCCTACTTGCCCAAA
GTCAGATAACTTCCTGGACTGATGATGTTGTACCAGGGAAATGTTAGTGA
TCCCCAAAAAACCAGACAGGAATCGATCTGATGCAACTCACAGCAGGGTC
TTTATTCTATTTGAGCTAGTTTGGGCCCCTCCAATGCACCACTTTCATGC
AGGACAGTTTTGGTTGGGGGGCGGGGAGCCCTGGATGTCTATCAGGGCAA
GGCTTTATAGTAAGCAGCAAGCAGAGGCTAAGTGTGCAAGCATCTAATTG
GAAAGCTAATGTGGCCTTTAACATAATTGGCCAGTGCTGTGACTCATATC
ATAAACTTAACTTCTGCTCCCCTCTGCATTCCACACCATTTCTCTGGGAA
TCCTGTGTATGGACTTGGCCAGTATCCATCTCCTGGCCATTATGAAGTGT
AAGTTTATGGTTGTGGCATGTGGTGTTTTGCTGAGATAAGACCCATGCGA
GGGCACATGATATCTGGAGAAAGTATAAATGGGACTCAATAGACAGTGA

AAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCAACCACACCCTACGGG
AGGCCCCATGCTCAAAAACTAGTTGGCTAAAATAAATTCGACTCCCATGT
ATTTTTCATTGCCTTTTTTTTCCTGTTTCCTTCCATCACCCCCACCCTGC
TTGAAACAGGGTTTCTTTGTGTAACAGGGTTTCCTGAACCTTCACTTTGT
ATGTCCTCCTGACTTTGCCTCCTGAATGCTGGATTAAAGATGGATGCTAC
CACTGCCCATGGGATGGGACTCAATTTGGGCCAATTATTGATTGACCATT
CCCCCAGTGTCTGCATCCATCCCCAATCATTGTGTTTGGACACACAAGGC
ATGTTCTCTCTTGTAGGGGGATATTACCTATGAAATACGGGATGCACATG
CTGAACTCCATACACAAGGAGGCCGGACAGGAAGCACAACCAAGAATGCT
TGATTCTCACTTGTAAGGGCAATGGAAAGGTGTTGTAATACACATGGAGG
GAGGGATCTGGGTGAAAGAGGCGCATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_b01.b1 MSMg01no544_b01.b1 CHROMAT_FILE:
MSMg01no544_b01.b1 PHD_FILE: MSMg01no544_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:36 2005
         (511 letters)



>mm_chr7_28813134_28814044
          Length = 911

 Score =  930 bits (481), Expect = 0.0
 Identities = 503/511 (98%), Gaps = 3/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaaggatcttataaggggaatcacttgtaagggctaaagttaacctgtaagccctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catgaaggatcttataaggggaatcacttgtaagggctaaagttaacctgtaagccctac 263

                                                                       
Query: 61  ttgcccaaagtcagataacttcctggactgatgatgttgtaccagggaaatgttagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ttgcccaaagtcagataacttcctggactgatgatgttgtacccgggaaatgttagtgat 323

                                                                       
Query: 121 ccccaaaaaaccagacaggaatcgatctgatgcaactcacagcagggtctttattctatt 180
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccc-caaaaccagacaggaatcgatctgatgcaactcacagcagggtctttattctatt 382

                                                                       
Query: 181 tgagctagtttgggcccctccaatgcaccactttcatgcaggacagttttggttgggggg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 383 tgagctagtttgggcccctccaatgcaccactgtcatgcaggacagttttggttggggg- 441

                                                                       
Query: 241 cggggagccctggatgtctatcagggcaaggctttatagtaagcagcaagcagaggctaa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -ggggagccctggatgtctatcagggcaaggctttatagtaagcagcaagcagaggctaa 500

                                                                       
Query: 301 gtgtgcaagcatctaattggaaagctaatgtggcctttaacataattggccagtgctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgcaagcatctaattggaaagctaatgtggcctttaacataattggccagtgctgtg 560

                                                                       
Query: 361 actcatatcataaacttaacttctgctcccctctgcattccacaccatttctctgggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 actcatatcataaacttaacttctgctcccctctgcattccacactatttctctgggaat 620

                                                                       
Query: 421 cctgtgtatggacttggccagtatccatctcctggccattatgaagtgtaagtttatggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgtgtatggacttggccagtatccatctcctggccattatgaagtgtaagtttatggt 680

                                          
Query: 481 tgtggcatgtggtgttttgctgagataagac 511
           ||||||||||||||||||||||||| |||||
Sbjct: 681 tgtggcatgtggtgttttgctgagacaagac 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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