BAC Information

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BAC

Clone NameMSMg01-544B02
Chromosome7 (Build37)
Map Location 126,334,858 - 126,335,526
singlet/doubletsinglet
Overlap genenone
Upstream gene2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139
Downstream geneLOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544B02.T7 (MSMg01no544_b02.b1)MSMg01-544B02.TJ (MSMg01no544_b02.g1)
ACCAG609453AG609454
length787756
length of high quality
(start - end)
430 (51 - 480)668 (81 - 748)
definitionCHROMAT_FILE: MSMg01no544_b02.b1 PHD_FILE: MSMg01no544_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:37 2005CHROMAT_FILE: MSMg01no544_b02.g1 PHD_FILE: MSMg01no544_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCCACATTTCTCATAAATCAAGGTAATGTCCCACAGATA
TGTCCACAAGTCAATAATGGAGGCAATTCTTCAACTCAGACTCCCTTTTC
TCAGGTGACTCTATTTTGTGCTAAGCTGATAATAAAAACTAACAAGTATA
ATTTGATAGATAGATTGGTGGATAATTAAATGAATATATGGATGGAATGG
GTGGATGCTATGTAGGTAGCTGGATAAAGGACAATAGGTCAGTAGAAGGG
TAGGTAGTTATACAGATGGATGGGCAAATGGATAAATCTATGAAAATGGG
TGGGGTGGTATATGGATGGATGAGTAGTTATATGGATAGGCAGATAAGGG
GCGAATGGATAAATAGCTAAATGCATGGATAAGTGGGTGATGAATAATAG
AATATGTGGATAAGGAATGGATGGGTGGGTAGCTGATAGCATGCNTGGCT
GGATGATTAGGAGGAAAGATGATATANATGCGTGTGGCTGANCNATGGTA
TGTGAAAATTGCCTAATANNGTCCGTATATTCTTACCTTTTTTTGNTTTC
GANGATCTCTTTTTGATAACTGGAAACCCTTTCTCTTTTAATGTTAAAAT
CTCTATTTTAGGCCCTTATACATNTCTCTGTATGGTTCGCGCATGGATGT
ATAATTGTTTCTGTATCTTTTGTACACCCCACGTCTATTTACAGCTCTTC
TTATCCATAATAATAATCTCCNCTCAACGCAAAATTA
GGTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCCTAATGACCAGCCT
GCCCAGCCATGTCAGGGAGCTCCGGGTCTCAAAAGCACGAGATTGACAGC
ACCTGTAAGGGAATGACACCAGAGGTCTTCTTCTGACCTATGCACACACA
TACATGTACACATATACACAGAGATATCATCTATATTCAGGATAGACAAA
CATTAGTATCCATCTCTACTTCATTCTAAGTCTCTGGGATGAGGAGTGAA
ATGGACCAAAAACCTTGAAAGTGTTGTCATGAAAACAGAGCAATGGGTAG
GTAGAGTTGGATGTGCAGCGCAGGAGAGACACGAGCAGCAGATTGCAGGT
CCCATGTGCACATGCTTTCAGTGTAAAGATCTTCAGTTTCTATGTGTGCT
CTACCATTCTTCTCATAAGATATATAAGACTGTGCTGTGTAATGGCTCTT
GGTCAGAGATGTTATTACAAGCAATTGAAACCAACATTTCCTCATGGTGT
CGCAATTCTTTAGAAATTTAACCTTCGGAGTTGTTGCAAAGACAATTCCT
TCGCGGCTATTAGGCTGTCAAAACGCCACTGGTATTTCCCTGGATGGTTC
GGTCCTCCGCTGACCTTGGCTAGCTCTGTCAGAGTGTTTTCCGGTTTGTC
TTTGTCGGCAGGCTCCTGTTTGCTTTTCAGCAAGAACGATAGCAGTGTGC
TTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_b02.g1 MSMg01no544_b02.g1 CHROMAT_FILE:
MSMg01no544_b02.g1 PHD_FILE: MSMg01no544_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:37 2005
         (668 letters)



>mm_chr7_126334658_126335726
          Length = 1069

 Score = 1218 bits (630), Expect = 0.0
 Identities = 660/670 (98%), Gaps = 3/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcctaatgaccagcctgcccagccatgtcagggagctccgggtctcaaaagcacga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggcctaatgaccagccagcccagccatgtcagggagctccgggtctcaaaagcacga 260

                                                                       
Query: 61  gattgacagcacctgtaagggaatgacaccagaggtcttcttctgacctatgcacacaca 120
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattggcaacacctgtaagggaatgacaccagaggtcttcttctgacctatgcacacaca 320

                                                                       
Query: 121 tacatgtacacatatacacagagatatcatctatattcaggatagacaaacattagtatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgtacacatatacacagagatatcatctatattcaggatagacaaacattagtatc 380

                                                                       
Query: 181 catctctacttcattctaagtctctgggatgaggagtgaaatggaccaaaaaccttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctctacttcattctaagtctctgggatgaggagtgaaatggaccaaaaaccttgaaa 440

                                                                       
Query: 241 gtgttgtcatgaaaacagagcaatggg-taggtagagttggatgtgcagcgcaggagaga 299
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttgtcatgaaaacagagcaatggggtaggtagagttggatgtgcagcgcaggagaga 500

                                                                       
Query: 300 cacgagcagcagattgcaggtcccatgtgcacatgctttcagtgtaaagatcttcagttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacgagcagcagattgcaggtcccatgtgcacatgctttcagtgtaaagatcttcagttt 560

                                                                       
Query: 360 ctatgtgtgctctaccattcttctcataagatatataagactgtgctgtgtaatggctct 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ctatgtgtgctctaccattcttctcataacatatataagactgtgctgtgtaatggctct 620

                                                                       
Query: 420 tggtcagagatgttattacaagcaattgaaaccaacat-ttcctcatggtgtcgcaattc 478
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 621 tggtcagagatgttattacaagcaattgaaaccaacatcttc-tcatggtgtcgcaattc 679

                                                                       
Query: 479 tttagaaatttaaccttcggagttgttgcaaagacaattccttcgcggctattaggctgt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttagaaatttaaccttcggagttgttgcaaagacaattccttcgcggctattaggctgt 739

                                                                       
Query: 539 caaaacgccactggtatttccctggatggttcggtcctccgctgaccttggctagctctg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caaaacgccactggtatttccctggatggttcggtcctccgctgaccttggctagctctg 799

                                                                       
Query: 599 tcagagtgttttccggtttgtctttgtcggcaggctcctgtttgcttttcagcaagaacg 658
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 800 tcagagtgttttccggtttgtctttgtcggcaggctcctgtttgctttccagaaagaacg 859

                     
Query: 659 atagcagtgt 668
           | ||||||||
Sbjct: 860 acagcagtgt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space:   696822
Effective search space used:   696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)