BAC Information

Click to search

BAC

Clone NameMSMg01-544I15
Chromosome7 (Build37)
Map Location 87,627,975 - 87,628,177
singlet/doubletsinglet
Overlap geneBlm
Upstream geneAI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647
Downstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544I15.T7 (MSMg01no544_i15.b1)MSMg01-544I15.TJ (MSMg01no544_i15.g1)
ACCAG609814AG609815
length828743
length of high quality
(start - end)
198 (50 - 247)379 (82 - 460)
definitionCHROMAT_FILE: MSMg01no544_i15.b1 PHD_FILE: MSMg01no544_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:14 2005CHROMAT_FILE: MSMg01no544_i15.g1 PHD_FILE: MSMg01no544_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTGGACTTAAGATTGCGGCGCTAAACGACTCACTATTTTCAGAGGATCC
GCGGAATTCACAGAAGTTGACGGCAGAAGGCCATATAGAGAATGAACTAA
GGAAACATGAAGGATTAATGGGTGCCAAGAGCAGTCACCCAGAGGAGAAG
GACGCTTGTGTCAGAGTCACCGCATTCCCTTTGCCGCCCAGAGCAAAAGT
ACAGGACCCATGATCTCTCCTTTTATTTATTTCTGCCATGTGTGTACTGC
CCCCTTTATCTTTTTAATAATTAAGGTCACCTTTATTATGAGNCATAATT
TTCTTTAATTGTTAAACTTTTACAGTGTTTTTTTTTTTTGGCTTGTGTTT
TTGAGAACAGAGTCTAACTATATTGCCCTTTTCTTCTGTGTGTGGGGGGG
GTGTGTTTTGTGTGGTATGTGGTGATAGCGNNGGGGTGGGCTTATTGCCA
GGCGTAAAAAATCTTGGTGTCCTTTCTCTCTTCAAGTTTATAATTTAAAA
CAAGGNGCTGTGGTCTTGATTGACCGNNNNNNTTCATTAACTTTTTCATC
TTTTTTTTTCTCTCCTTTCTTTCGTCGGGGTCATAAATCATTTCCTCTTT
TAATTCCCCCCCGGGGTTTCTTCCTGGTCTCTTGTCCTTTTGTTTCCCAT
TGTTCGTGTTTTATTAACTAACTCTGTGCTTTCGTGGCTTCTTGAGGAGA
TTTCAATATTTGGGCCCCCTCTTAATTTTATCCATATTAAGCTACTTCTT
ATCTTTCCTCTAGTTTTTTATTCCCCTGCCTCTGTCGTTGAAATTTTTTT
TGTGTAGTCGCCGGCGCTGATACAATCN
ATGTGTCGATTCTATGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTAGACCTGGCTGG
CCTCAAATTCACAGAGAACTGCCTGCCTCTGCCTCCAAGTGCTGGCTCCC
ACCTGGTCTCTTGAAATCTCTCGATTAATTTGGAGCTCATGCATGAGTCG
GGCTGGCCGGCCATCAAGCCTTAGGGTCTTATTGCCCTCAAGCCCCAACC
CGAGCGTGGGGTTACAGACAGGCCTGGCCCGGGCAGCTCTGACTGATGTG
AGTGATGCAGCTCTGATCTGAACTCCATTCTTATGCAGCAGGCGCGTTCC
CGAGTCAGCTCCCATGCTGCCTGCAAGGCTTTGCTCTAATAAGTGTGTGT
GTTTCACAGAGAAAAGCTTCATATCCAGGTCGATTTACAAACCGAGGGGG
AAATCTTTTAAAAGAAGAAAAGGAACGAGCAAAGCTCCAGAAAACACTCC
CTAAGGTAATTCTGGTTGTAAGATACCCTATTCTTTGTGCTTTCTAAACA
CAGGAAGGACAGGATATATTGGGCCCTTATAGTGTAGCAACTGAGTATCA
TAGTTTTGCTAATGCTGCCACTTTTTACTACCATTGGATTACTTGTCGTT
AATACCTCAGAAATTTTATGTTTTTAACGGAACTTCAGGCGTCTTTTGAT
AGGTTGGCTCTTCCTTCTCTTTTTTTTATGATAGACTTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_i15.b1 MSMg01no544_i15.b1 CHROMAT_FILE:
MSMg01no544_i15.b1 PHD_FILE: MSMg01no544_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:14 2005
         (198 letters)



>mm_chr7_87627753_87628350
          Length = 598

 Score =  327 bits (169), Expect = 3e-94
 Identities = 192/203 (94%), Gaps = 8/203 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacaga--agt---t---gacggcagaaggccatatagagaatgaactaaggaa 55
           ||||||||||||  |||   |   || |||||||||||||||||||||||||||||||||
Sbjct: 425 ggaattcacagaagagtctataaggaaggcagaaggccatatagagaatgaactaaggaa 366

                                                                       
Query: 56  acatgaaggattaatgggtgccaagagcagtcacccagaggagaaggacgcttgtgtcag 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acatgaaggattaatgggtgccaagagcagtcacccagaggagaaggacgcttgtgtcag 306

                                                                       
Query: 116 agtcaccgcattccctttgccgcccagagcaaaagtacaggacccatgatctctcctttt 175
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtcaccacattccctttgcagcccagagcaaaagtacaggacccatgatctctcctttt 246

                                  
Query: 176 atttatttctgccatgtgtgtac 198
           |||||||||||||||||||||||
Sbjct: 245 atttatttctgccatgtgtgtac 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)