BAC Information

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BAC

Clone NameMSMg01-544P06
Chromosome7 (Build37)
Map Location 109,739,605 - 109,740,141
singlet/doubletsinglet
Overlap genenone
Upstream geneClpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551
Downstream geneOlfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544P06.T7 (MSMg01no544_p06.b1)MSMg01-544P06.TJ (MSMg01no544_p06.g1)
ACCAG610131AG610132
length758754
length of high quality
(start - end)		605 (48 - 652)531 (79 - 609)
definitionCHROMAT_FILE: MSMg01no544_p06.b1 PHD_FILE: MSMg01no544_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:47 2005CHROMAT_FILE: MSMg01no544_p06.g1 PHD_FILE: MSMg01no544_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGATGAATACTGAATAGCTGAAAAGCACCTAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAATCCTGAGAG
TCCACCTCATGCCTGTCAGAATGGCTAAGAACAAAAATTCAGGTGACAGC
AGATGATGGCTAGGATGTGGAGAAAGAGAAACACTCCTCTATTGCTGGTG
GAATTGCAAGCTGGCACAACCACTCTGGAAATCATTGGCAGCTTCTCAGA
AAATTAGACATAATTTTACTGGAAGATCCAGCAATATCACTCCTGGGCAT
ATACCCAGAAGATGCTCCAATATGTAATAAGGACACATGCTTCACTATGT
TCATATCAGCCTTATTTATAATAACCAGAAGCTGGAAAGAACCCTTTTGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTATACAATAAA
GTACTATGCAGCTATTAAAAACAGTGAATTCATGAAATTCTTAGACAAAT
GGATGTATCTGGAGGATATCATCCTAAGTGAGGTAACCCAATCACAAAAG
AACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTC
AGAATACCCATGATACAACTTGCAAAACACATGAAACTCAAGAAGAAGGA
AGAGTGAAATTTGGACACTTTGATCCTTCTTAGAAAGGGGAACAAAATAC
TCATGGAA

TTCTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAACATCCAGGGTGGGA
AGATTGTAGGCAGTGATGCAAGGCCAAAGTTAGACCACTGTCATCAGCAT
TCACACTGACCCCTGTTGTCTGATTTAGGACCTGAGGACTGAACAGCATG
TTTGTCGAGCCCATTCATGGTGATGGTAGTGGATGCTCTTACAGCATTCT
TATTTCCATGTCTGTAGCTGACTTTTTTTTTAATACCTTAGTGTTTTATC
CCCCTTGATTCATTTGCATCTTGCAGTCAACCTGACATACCCTTGCCTCT
TTCAAATAACTTTCACAGAATATCAAGTAGTCTCCCATCCATTTGTCTTG
TTTGACTCATTTTAGCATTTGCTACAAGACAGGCCTTACCTAGAACACAT
GAGAATAGGTGTTCAAGCATCAGGAACAGAGCTGTGCTATGAGTAAAGGA
GCAAATTGTTCACCCCTCTTGAGCACCTGAAAGCCACTTGCCAGCATTTA
CCACTCCTTTATGGAAGACCAAGTTCAGTGCAATTCAAATCCTGGTTTAG
AAACTCACCAGCTCTGTAGATTCAGTGATCTCCTCTAAGCTCTGTTAACC
TGCTTCCCTATGACCTAGAAAGGTTGATTCATACTTCATAGGTGGCTGTG
TTTATTAGCCAAAAAGAGTAAGAAATATCTCATTGAGAAACAACCCTAGT
GGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_p06.g1 MSMg01no544_p06.g1 CHROMAT_FILE:
MSMg01no544_p06.g1 PHD_FILE: MSMg01no544_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:47 2005
         (531 letters)



>mm_chr7_109739405_109740341
          Length = 937

 Score =  934 bits (483), Expect = 0.0
 Identities = 522/537 (97%), Gaps = 6/537 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaaacatccagggtgggaagattgtaggcagtgatgcaaggccaaagttagaccac 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaaacatccagggtgggaagattataggcagtgatgcaaggccaaagttagaccac 260

                                                                       
Query: 61  tgtcatcagcattcacactgacccctgttgtctgatttaggacctgaggactgaacagca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcatcagcattcacattgacccctgttgtctgatttaggacctgaggactgaacagca 320

                                                                       
Query: 121 tgtttgtcgagcccattcatggtgatggtagtggatgctcttacagcattcttatttcca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgttgagcccattcatggtgatggtagtggatgctcttacagcattcttatttcca 380

                                                                       
Query: 181 tgtctgtagctgacttttttttt-aataccttagtgttttat---ccccct--tgattca 234
           ||||||||||||||||||||||| ||||||||||||||||||   ||||||  |||||||
Sbjct: 381 tgtctgtagctgactttttttttaaataccttagtgttttatcccccccctcctgattca 440

                                                                       
Query: 235 tttgcatcttgcagtcaacctgacatacccttgcctctttcaaataactttcacagaata 294
           | |||||||| |||||| |||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 tctgcatctttcagtcagcctgacataccctaacctctttcaaataactttcacagaata 500

                                                                       
Query: 295 tcaagtagtctcccatccatttgtcttgtttgactcattttagcatttgctacaagacag 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tcaagtagtctcccatccatttgtcttgtttgactcattttagcatttgctagaagacag 560

                                                                       
Query: 355 gccttacctagaacacatgagaataggtgttcaagcatcaggaacagagctgtgctatga 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccttacctagaacacatgagaataggtgttcaagcatcaggaacagagctgtgctatga 620

                                                                       
Query: 415 gtaaaggagcaaattgttcacccctcttgagcacctgaaagccacttgccagcatttacc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaaggagcaaattgttcacccctcttgagcacctgaaagccacttgccagcatttacc 680

                                                                    
Query: 475 actcctttatggaagaccaagttcagtgcaattcaaatcctggtttagaaactcacc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcctttatggaagaccaagttcagtgcaattcaaatcctggtttagaaactcacc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 937
Length adjustment: 10
Effective length of query: 521
Effective length of database: 927
Effective search space:   482967
Effective search space used:   482967
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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