BAC Information

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BAC

Clone NameMSMg01-545D08
Chromosome7 (Build37)
Map Location 28,544,880 - 28,695,217
singlet/doubletdoublet
Overlap geneLOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik
Upstream geneCyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60
Downstream geneEG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545D08.T7 (MSMg01no545_d08.b1)MSMg01-545D08.TJ (MSMg01no545_d08.g1)
ACCAG610325AG610326
length739735
length of high quality
(start - end)		662 (37 - 698)657 (68 - 724)
definitionCHROMAT_FILE: MSMg01no545_d08.b1 PHD_FILE: MSMg01no545_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:07 2005CHROMAT_FILE: MSMg01no545_d08.g1 PHD_FILE: MSMg01no545_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,694,571 - 28,695,217)(28,544,880 - 28,545,536)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAC
TGATGTGAGACTCTTTCAGTGCATGGAAGGTGGGAATGACTTTGTTCATG
GACTAGACCTTAGAATTCATCAGGGAATCCATACCAGTGAGACTCCCTTT
CAATGTAATGAATATGGGGAACCCTTTCATAATCATAACCAATTTTCTTG
GACATATTAGAATTCATACTGGTAGGAAACCCTATCACTGTAAGGAATGT
GGAAAGAACTTCAACTTGAGCTCAGGCCTTCTTTAACATAAAAGAACCCA
TGCTGGTGTCAAACACTATGAATGCGAGGAATGTGGGAACATTTATAGAA
TTAGCTCAAGCTCTTCAGAGAGTCCATTGAGGTTTGAAACCATGTGAATG
AGAAGAATCAGGAAAAGTCTTTATTGTAAACGATGAGTTTAGACATCATC
AGAAAATCTGTAATAGCCAGGAGTCCTATTCGTGTAAGGGAGGTGGACAA
GCTATTGTATGAAAATGTTACTGAACATCAGGGTCCTCATATTGGGAATA
CTGTGACTTAAAATAATGTGGGAACTTTAATCTGCCCTGGATATGGTGAC
CATTGGTGTGTCATATCCTGTCAATGCCAGAAGCTCTTTGGAATGAGAAT
GTGGGAAGTGGTTGTTAAGAGTAAATACTTGGTTGAGATTTTCATGTCAA
AAATTCANGGTAGCAATTATGTTCTTGATTTACTCTCCT

AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGACTATTTAGTAACTGCATGACCCACGCTCTC
TGCTCTTGGACCACTCTCATGACCAGCTTAGGAAATCTATGATCAACAAT
CTTGCTACACACTTTCCTGATGATAACCTGTAGGTGGTCATCTATAACTG
TCTTGAGATGACGTCTCCACATAAGATCTTGGTGCAGTGCTCTACACGGA
GGGGAGCAGGTTAGTGAAGATGAAACCCAGTGCATGTGGCTGCAGTAATT
TGTTTAAGTGAAATGAAGGAGGGCCCAAACTGTAGGGCTGGGTACCTCAG
CCCAGAGAACAGAACTAATGGATCTGATCAGGACTCTCAGCTGGGGCAAA
GGAAAGTCCACCACTGTAACCTCCTACAGCCTAGGAGGCTGGTTCAGACC
TTACACCACTGAGGCAGGGACACCTGCTGTGCTGCTTCTCCACTCTACTA
GTTTCCTTTGATGTTACACTGCCTGCCACCTGCCATGAGGTCAAACCAGT
TCTCCAAGACTTTCCGGAGTTAACTACAACCTGTGAATCTGGCAAATTGC
TGCTAAAAGGCTGTGCTGACAACATCAAGAAACTTGGCATGACTGAGGAT
GGGCTTCCCTCTTTATAAGTGCAGATTTTATTATTAAACATTTGAACCTT
GAGCAGACTAGCATGTCTTAGTTCCATTATTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_d08.b1 MSMg01no545_d08.b1 CHROMAT_FILE:
MSMg01no545_d08.b1 PHD_FILE: MSMg01no545_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:07 2005
         (662 letters)



>mm_chr7_28694156_28695217
          Length = 1062

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Minus

                                                                        
Query: 16   gatgtgagactctttcagtgcatggaaggtgggaatgactttgttcatggactagacctt 75
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1062 gatgtgagactctttcagtgcatggaaggtaggaatgactttgttcatggactagacctt 1003

                                                                        
Query: 76   agaattcatcagggaatccataccagtgagactccctttcaatgtaatgaatatggggaa 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 agaattcatcagggaatccataccagtgagactccctttcaatgtaatgaatatggggaa 943

                                                                        
Query: 136  ccctttcataatcataaccaattttcttggacatattagaattcatactggtaggaaacc 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  ccctttcataatcataaccaattttcttggacatattagaattcatactggtaggaaacc 883

                                                                        
Query: 196  ctatcactgtaaggaatgtggaaagaacttcaacttgagctcaggccttctttaacataa 255
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 882  ctatcactgtaaggaatgtggaaagaacttcaatttgagctcaggccttctttaacataa 823

                                                                        
Query: 256  aagaacccatgctggtgtcaaacactatgaatgcgaggaatgtgggaacatttatagaat 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  aagaacccatgctggtgtcaaacactatgaatgcgaggaatgtgggaacatttatagaat 763

                                                                        
Query: 316  tagctcaagctcttcagagagtccattgaggtttgaaaccatgtgaatgagaagaatcag 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  tagctcaagctcttcagagagtccattgaggtttgaaaccatgtgaatgagaagaatcag 703

                                                                        
Query: 376  gaaaagtctttattgtaaacgatgagtttagacatcatcagaaaatctgtaatagccagg 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  gaaaagtctttattgtaaacgatgagtttagacatcatcagaaaatctgtaatagccagg 643

                                                                        
Query: 436  agtcctattcgtgtaagggaggtggacaagctattgtatgaaaatgttactgaacatcag 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  agtcctattcgtgtaagggaggtggacaagctattgtatgaaaatgttactgaacatcag 583

                                                                        
Query: 496  ggtcctcatattgggaatactgtgacttaaaataatgtgggaactttaatctgccctgga 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  ggtcctcatattgggaatactgtgacttaaaataatgtgggaactttaatctgccctgga 523

                                                                        
Query: 556  tatggtgaccattggtgtgtcatatcctgtcaatgccagaagctctttggaatgagaatg 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  tatggtgaccattggtgtgtcatatcctgtcaatgccagaagctctttggaatgagaatg 463

                                                           
Query: 616  tgggaagtggttgttaagagtaaatacttggttgagattttcatgtc 662
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462  tgggaagtggttgttaagagtaaatacttggttgagattttcatgtc 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_d08.g1 MSMg01no545_d08.g1 CHROMAT_FILE:
MSMg01no545_d08.g1 PHD_FILE: MSMg01no545_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:07 2005
         (657 letters)



>mm_chr7_28544680_28545736
          Length = 1057

 Score = 1239 bits (641), Expect = 0.0
 Identities = 653/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactatttagtaactgcatgacccacgctctctgctcttggaccactctcatgaccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactatttagtaactgcatgacccacgctctctgctcttggaccactctcatgaccagc 260

                                                                       
Query: 61  ttaggaaatctatgatcaacaatcttgctacacactttcctgatgataacctgtaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggaaatctatgatcaacaatcttgctacacactttcctgatgataacctgtaggtgg 320

                                                                       
Query: 121 tcatctataactgtcttgagatgacgtctccacataagatcttggtgcagtgctctacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatctataactgtcttgagatgacgtctccacataagatcttggtgcagtgctctacac 380

                                                                       
Query: 181 ggaggggagcaggttagtgaagatgaaacccagtgcatgtggctgcagtaatttgtttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggggagcaggttagtgaagatgaaacccagtgcatgtggctgcagtaatttgtttaa 440

                                                                       
Query: 241 gtgaaatgaaggagggcccaaactgtagggctgggtacctcagcccagagaacagaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaaatgaaggagggcccaaactgtagggctgggtacctcagcccagagaacagaacta 500

                                                                       
Query: 301 atggatctgatcaggactctcagctggggcaaaggaaagtccaccactgtaacctcctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggatctgatcaggactctcagctggggcaaaggaaagtccaccactgtaacctcctac 560

                                                                       
Query: 361 agcctaggaggctggttcagaccttacaccactgaggcagggacacctgctgtgctgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctaggaggctggttcagaccttacaccactgaggcagggacacctgctgtgctgctt 620

                                                                       
Query: 421 ctccactctactagtttcctttgatgttacactgcctgccacctgccatgaggtcaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccactctactagtttcctttgatgttacactgcctgccacctgccatgaggtcaaacc 680

                                                                       
Query: 481 agttctccaagactttccggagttaactacaacctgtgaatctggcaaattgctgctaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttctccaagactttccggagttaactacaacctgtgaatctggcaaattgctgctaaa 740

                                                                       
Query: 541 aggctgtgctgacaacatcaagaaacttggcatgactgaggatgggcttccctctttata 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 aggctgtgctgacaacatcaagaaacttggcatgactggggatgggcttccctctttata 800

                                                                    
Query: 601 agtgcagattttattattaaacatttgaaccttgagcagactagcatgtcttagttc 657
           ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 agcacagattttattattaaacatttgaactttgagcagactagcatgtcttagttc 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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