Query= MSMg01no545_h11.b1 MSMg01no545_h11.b1 CHROMAT_FILE:
MSMg01no545_h11.b1 PHD_FILE: MSMg01no545_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:26 2005
(687 letters)
>mm_chr7_99972226_99973312
Length = 1087
Score = 1276 bits (660), Expect = 0.0
Identities = 678/684 (99%), Gaps = 2/684 (0%)
Strand = Plus / Plus
Query: 5 gaattctct-aattttcaactttaggggaagaagtacaggtatgttttttataacattta 63
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaatttt-aactttaggggaagaagtacaggtatgttttttataacattta 263
Query: 64 ttaaactgtttcattcaaacccaaattgaaaatgatgtactggggtagggctcagctggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaactgtttcattcaaacccaaattgaaaatgatgtactggggtagggctcagctggc 323
Query: 124 agaatacttgcctagcatgcaagaagctctgggttaaaccattagcaccaatggaactgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 agaatacttgcctagcatgcaagaagctctgggttaaaccattagcaccaatggatctgg 383
Query: 184 gtacagtagtacttacctgtgatctggacgagggtcaggtgggttaacaggaagcttaag 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcagtagtacttacctgtgatctggacgagggtcaggtgggttaacaggaagcttaag 443
Query: 244 gtcacccttaacatagcacattggaggccagcccagcttatctgagaagccatctcagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcacccttaacatagcacattggaggccagcccagcttatctgagaagccatctcagaa 503
Query: 304 gaaagaaattatacacaattaatttagggatggtatgcttatatatgaagacagtgagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaagaaattatacacaattaatttagggatggtatgcttatatatgaagacagtgagga 563
Query: 364 aaatacattttcctgccataccagaagtgatgtgaaaacaaagtaggaatttctttttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatacattttcctgccataccagaagtgatgtgaaaacaaagtaggaatttctttttga 623
Query: 424 atttcaaagttggaccaataacattcctattctaaataaaaggcccatttaagaaaacct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttcaaagttggaccaataacattcctattctaaataaaaggcccatttaagaaaacct 683
Query: 484 tctgatccccacattttgctgtaggtaatttagtcacatattaaaattatcctttctccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctgatccccacattttgctgtaggtaatttagtcacatattaaaattatcctttctccc 743
Query: 544 actgtacctttatgttagaactctaaatgtctaagaaaagacctttgatccctactttgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgtacctttatgttagaactctaaatgtctaagaaaagacctttgatccctactttgc 803
Query: 604 cttccacttggtgccttggtacttagaagtagtgtagtatgtatagaaacaggagtagtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttccacttggtgccttggtacttagaagtagtgtagtatgtatagaaacaggagtagtg 863
Query: 664 tgttcactgaatatgtattgtaag 687
|||||| ||||||||||| |||||
Sbjct: 864 tgttcattgaatatgtatcgtaag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_h11.g1 MSMg01no545_h11.g1 CHROMAT_FILE:
MSMg01no545_h11.g1 PHD_FILE: MSMg01no545_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:26 2005
(498 letters)
>mm_chr7_100152408_100153305
Length = 898
Score = 623 bits (322), Expect = 0.0
Identities = 373/412 (90%), Gaps = 37/412 (8%)
Strand = Plus / Minus
Query: 1 atctgagtcagtgcctccatcactgaccactaagaacattccagccacaaagatttcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atctgagtcagtgcctccatcactgaccactaagaacattccagccacaaagatttcctc 353
Query: 61 cctctgctggaagaatctgaagaaacttacctctctggagcctatgtccccacttgtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cctctgctggaagaatctgaagaaacttacctctctggagcctatgtccccacttgtgcc 293
Query: 121 tctggagaactcttccccaccaacctcatggctggctcctgggcttagccagatgattct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 292 tctggagaactcttccccaccaacctcatggctggctcctgggcttagccagatgatttt 233
Query: 181 gcaaaagctacaacttggtgaagtattcctg------------------gtgta------ 216
||||||||||||||||||||||||||||||| |||||
Sbjct: 232 gcaaaagctacaacttggtgaagtattcctggggtgtgtgtgtgtgtgtgtgtatgtata 173
Query: 217 -atatgtaagtatgtatgtatgt--------acatata----tgtgagtgcatatacgtg 263
|||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct: 172 tatatgtaagtatgtatgtatgtatgtgtacacatatatatgtgtgagtgcatgtacgtg 113
Query: 264 tgtgtgcacatctatatgtgcatgtgtgtacatatgagtaagtatttacatatgtgtatg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgtgtgcacatctatatgtgcatgtgtgtacatatgagtaagtatttacatatgtgtatg 53
Query: 324 tatgtgggtatatatgtatatacttatatatgcatgtaagtatatgcatata 375
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tatgtgggtatatatgtatatacttatatatgcatgtaagtatatgcatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
