BAC Information

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BAC

Clone NameMSMg01-545I07
Chromosome7 (Build37)
Map Location 128,136,153 - 128,136,827
singlet/doubletsinglet
Overlap gene4933427G17Rik
Upstream geneDnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2
Downstream geneEG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I07.T7 (MSMg01no545_i07.b1)MSMg01-545I07.TJ (MSMg01no545_i07.g1)
ACCAG610561AG610562
length724726
length of high quality
(start - end)
680 (38 - 717)424 (68 - 491)
definitionCHROMAT_FILE: MSMg01no545_i07.b1 PHD_FILE: MSMg01no545_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:30 2005CHROMAT_FILE: MSMg01no545_i07.g1 PHD_FILE: MSMg01no545_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
AACTGCTATTAGAGAAAAGACTTGATTTCCTCAGCCACACCTTCTGCACA
CACTGGATTCCAGGATCCCAAAAGCTCAGCTCTGTTGGGCCTGGTTAGGA
CCTGTACGGGAGGAAGACCACATACGCGCTTTTTTTTTTTTTTTTTAGAT
TAGTTTTCAGTCCATAGACTAGGCTGGCCTGGAATTCATGCCAATCCTCC
TGCCTCAACCTCCTGGGTACCATCAGATCTGTCTTGTTCTTTCTTTTCTC
CTTCCATTTTCTCAGTCTCTTGAGATGAATTCCACTGTGCAGTCAGCCTC
AGAAAAGGGAAACCATGCCCAATGATTAAAGTGGGTTACAGCCATTTAGT
CAAACATTGACAACTCTCAGCTCATGAAAGTATCATTTATCTAGAAATGA
AGAATACATTAAAACAGCTTTGTATTTCATATGTTCTTGTGGGGGATTGA
GGAGGAAGGCTGTTGAATTCTGTTGGCCATATTTAGGAAAAGACTAAGTA
TTTACTGGCTGAATATTTAGCTTAGTGGGAGCACTAACTACGCAAGGCCC
TAGGTCTAATCCACAGTACTATGAGAGAGCGAAAGAGTGAGAGAGCAAGA
AAGAGAGAAAGAGAGAGCTATTATTTGACAAAGAACTTGTATCCGGAATA
TACAAAGTATTTCTGCAACTCAAT
GTGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGAGATCTGCTTGCCTCTGCCTTCCCCAAGC
GCTGGGATTAAATGTGTGCACCACCGCTGCCTGGTTTTGGTTGGTTGGTT
TGGGTTTTTGTTGTTGTTGTTGTTGTTTTGTTTGTCTTTTGAGACAGGGT
CTTATGGAGTCTCAGAATCACTGTGTTGCCGAGATGACTTTGAACTCTTG
AACCTTCTGTTACCACCTCCCAAGTGCTGAGATTATAGGCGTGGACCCCA
GTCTTGGATAATCCACCCTGATCCATGAGCAGTGTATTCCAAGACTTCAA
GGGATGTGTGAGACATGAGTAGTGCCTGACCCTCTGCCCTCTATACACTC
ATATCTATGATAAAGATTTAAGTCATAAACTAAACACATTAAGATATTGA
TAGTCACTAATAGTAATAATAATAAAAACTACAACATGTTGGGGGTGTGG
CTCATTTGCTGCCCATATACTAGGCCCTGGGTACCATCTCCAGTACTGCA
TAGAATCAAACCAGAACAAACAAACTGTAAAATTGTGGACATGCCGTCTC
TCTTCTTCCCTCTAGACATCGTACTGTACTGTGTAAATGTAGAAGCCGTC
TGTGCTTATTTCACTGGCTCCCAATAATTGAATCCAGAGAAAACTCGCAA
GCCCCAGTTATAAAGTGACCTACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i07.b1 MSMg01no545_i07.b1 CHROMAT_FILE:
MSMg01no545_i07.b1 PHD_FILE: MSMg01no545_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:30 2005
         (680 letters)



>mm_chr7_128135806_128136881
          Length = 1076

 Score = 1270 bits (657), Expect = 0.0
 Identities = 671/679 (98%), Gaps = 7/679 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcttaaactgctattagagaaaagacttgatttcctcagccacaccttctgcacac 64
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gaattcttaaacagctattagagaaaagacttgatttcctcagccacaccttctgcacac 963

                                                                        
Query: 65   actggattccaggatcccaaaagctcagctctgttgggcctggttaggacctgtacggga 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  actggattccaggatcccaaaagctcagctctgttgggcctggttaggacctgtacggga 903

                                                                        
Query: 125  ggaagaccacatacgcgc---tttttttttttttttttagattagttttcagtccataga 181
            ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 902  ggaagaccacatacgcgcttttttttttttttttttttagattagttttcagtccataga 843

                                                                        
Query: 182  ctaggctggcctggaattcatgccaatcctcctgcctcaacctcctgggtaccatcagat 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  ctaggctggcctggaattcatgccaatcctcctgcctcaacctcctgggtaccatcagat 783

                                                                        
Query: 242  ctgtcttgttctttcttttctccttccattttctcagtctcttgagatgaattccactgt 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  ctgtcttgttctttcttttctccttccattttctcagtctcttgagatgaattccactgt 723

                                                                        
Query: 302  gcagtcagcctcagaaaagggaaaccatgcccaatgattaaagtgggttacagccattta 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  gcagtcagcctcagaaaagggaaaccatgcccaatgattaaagtgggttacagccattta 663

                                                                        
Query: 362  gtcaaacattgacaactctcagctcatgaaagtatcatttatctagaaatgaagaataca 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  gtcaaacattgacaactctcagctcatgaaagtatcatttatctagaaatgaagaataca 603

                                                                        
Query: 422  ttaaaacagctttgtatttcatatgttcttgtgggggattgaggaggaaggctgttgaat 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  ttaaaacagctttgtatttcatatgttcttgtgggggattgaggaggaaggctgttgaat 543

                                                                        
Query: 482  tctgttggccatatttaggaaaagactaagtatttactggctgaatatttagcttagtgg 541
            ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 542  tctgttggccatatttaggaaaagac----tatttactggctgaatatttagcttagtgg 487

                                                                        
Query: 542  gagcactaactacgcaaggccctaggtctaatccacagtactatgagagagcgaaagagt 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  gagcactaactacgcaaggccctaggtctaatccacagtactatgagagagcgaaagagt 427

                                                                        
Query: 602  gagagagcaagaaagagagaaagagagagctattatttgacaaagaacttgtatccggaa 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426  gagagagcaagaaagagagaaagagagagctattatttgacaaagaacttgtatccggaa 367

                               
Query: 662  tatacaaagtatttctgca 680
            |||||||||||||||||||
Sbjct: 366  tatacaaagtatttctgca 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1076
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1066
Effective search space:   714220
Effective search space used:   714220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)