BAC Information

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BAC

Clone NameMSMg01-545K20
Chromosome7 (Build37)
Map Location 149,768,027 - 149,768,542
singlet/doubletsinglet
Overlap genenone
Upstream geneAp2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19
Downstream geneIgf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545K20.T7 (MSMg01no545_k20.b1)MSMg01-545K20.TJ (MSMg01no545_k20.g1)
ACCAG610681AG610682
length714714
length of high quality
(start - end)
621 (40 - 660)515 (69 - 583)
definitionCHROMAT_FILE: MSMg01no545_k20.b1 PHD_FILE: MSMg01no545_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:43 2005CHROMAT_FILE: MSMg01no545_k20.g1 PHD_FILE: MSMg01no545_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGCC
CCATTTGTCGATTCTCGATCTTACAGCGCAAGTCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAGGAGATAAGAATGGATCGATTCACATTCTTCT
ACAAGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TCTTCCACTGGATAGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTTAGTCTTCAATTCTGTTCCATTGGTCTACTTC
TCTGTCACTATACCAGTACCATGCAGTTTTTATCACTATTGCTCTGTAGT
AAAGCTTTAGGTCAGGAATGGTGATTCCACCAGAGGTTATTTTATCCTTG
AGAAGTTTTTGTTA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATGCCTCCTGGATGCTCGTGTGAATGTAGC
ATGTTCCTTTGAGTCCTGGGTGTAAGTGCCCTGCACGCTCATCCCCAGGA
CATGAAAATAGAATCTCTATTTTCTCACCAACCTTTTTCTTTCCTGTGGT
GATTCGGGAACTGTAGGCAATGGCTATTTTCTCGGTTTTAACTCAGGCTC
CAGGCAGACTCAGTACTGTCTGGTCATCAGTTGCTGCACAGAACACACTT
ACATGGCACCATGGCCCTTTAGCCTCTGCTATGTTCCTCCTGTATGGTCA
CAGCACTGCTATGTTCCTCCTGTATAGTCACAGCACTTTTGACTGCATTG
CATGGACAGTGAGCAGGAAAGCTTCCTTGGTCAGGCTAAACTCCTAGTGG
TTCATTTGCATTTCGATGGGATAGAGCTAGATCTCTTCTTCCAGAAACAA
GTTAGGCATGCCTTTGTCAATCTGGGGACTGCCAGGGCAGAAAGTACAAT
GAGGGCAGTAAGCTTTGGCGGGGAGGGGGGCTCTTGGGGTCAAGTCTAGT
CTGTTTTGGCCATTGTAATAGTACGTGACATTGAGGACTAGGTGATGGCT
AGCAGCTGGTGGGCAAACAGAACCTAACTGAAGCATGGTACTCTAATGGG
GGCTAGTATCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_k20.g1 MSMg01no545_k20.g1 CHROMAT_FILE:
MSMg01no545_k20.g1 PHD_FILE: MSMg01no545_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:43 2005
         (515 letters)



>mm_chr7_149767827_149768742
          Length = 916

 Score =  975 bits (504), Expect = 0.0
 Identities = 513/516 (99%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgcctcctggatgctcgtgtgaatgtagcatgttcctttgagtcctgggtgtaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgcctcctggatgctcgtgtgaatgtagcatgttcctttgagtcctgggtgtaagtg 260

                                                                       
Query: 61  ccctgcacgctcatccccaggacatgaaaatagaatctctattttctcaccaaccttttt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgcacgctcatcccccggacatgaaaatagaatctctattttctcaccaaccttttt 320

                                                                       
Query: 121 ctttcc-tgtggtgattcgggaactgtaggcaatggctattttctcggttttaactcagg 179
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttccttgtggtgattcgggaactgtaggcaatggctattttctcggttttaactcagg 380

                                                                       
Query: 180 ctccaggcagactcagtactgtctggtcatcagttgctgcacagaacacacttacatggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccaggcagactcagtactgtctggtcatcagttgctgcacagaacacacttacatggc 440

                                                                       
Query: 240 accatggccctttagcctctgctatgttcctcctgtatggtcacagcactgctatgttcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatggccctttagcctctgctatgttcctcctgtatggtcacagcactgctatgttcc 500

                                                                       
Query: 300 tcctgtatagtcacagcacttttgactgcattgcatggacagtgagcaggaaagcttcct 359
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tcctgtatagtcacagcacttttgactgcattgaatggacagtgagcaggaaagcttcct 560

                                                                       
Query: 360 tggtcaggctaaactcctagtggttcatttgcatttcgatgggatagagctagatctctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtcaggctaaactcctagtggttcatttgcatttcgatgggatagagctagatctctt 620

                                                                       
Query: 420 cttccagaaacaagttaggcatgcctttgtcaatctggggactgccagggcagaaagtac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttccagaaacaagttaggcatgcctttgtcaatctggggactgccagggcagaaagtac 680

                                               
Query: 480 aatgagggcagtaagctttggcggggaggggggctc 515
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgagggcagtaagctttggcggggaggggggctc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)