Query= MSMg01no546_h13.b1 MSMg01no546_h13.b1 CHROMAT_FILE:
MSMg01no546_h13.b1 PHD_FILE: MSMg01no546_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:47 2005
(205 letters)
>mm_chr7_64306668_64307273
Length = 606
Score = 275 bits (142), Expect = 2e-78
Identities = 175/188 (93%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 5 gaattctccggctttttc-attttgcacagcctcttctagctgtttcactgtgactgtgc 63
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggctttttcaattttgcacagcctcttctagctgtttcactgtgactgtgc 264
Query: 64 tctcctagaattgaaaaaggagagggcaggctctttcctttggcactataaagtgtgtgt 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 tctcctagaattgaaaaaggagagggcaggctctttcctttggcaccataaagtgtgtgt 324
Query: 124 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgt 183
|||||||||||||||||||||| ||||||| ||||||| | |||||| | ||| |||
Sbjct: 325 gtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtat----ctgtgtttttgtttgt 380
Query: 184 gtctgtgt 191
||||||||
Sbjct: 381 gtctgtgt 388
Score = 95.5 bits (49), Expect = 2e-24
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 115 agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 474
Score = 95.5 bits (49), Expect = 2e-24
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 116 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgt 175
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct: 429 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtatgt-tgt 487
Query: 176 g 176
|
Sbjct: 488 g 488
Score = 93.5 bits (48), Expect = 8e-24
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 117 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 475
Score = 93.5 bits (48), Expect = 8e-24
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 119 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 166
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 8
Length of query: 205
Length of database: 606
Length adjustment: 8
Effective length of query: 197
Effective length of database: 598
Effective search space: 117806
Effective search space used: 117806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no546_h13.g1 MSMg01no546_h13.g1 CHROMAT_FILE:
MSMg01no546_h13.g1 PHD_FILE: MSMg01no546_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:47 2005
(670 letters)
>mm_chr7_64468363_64469432
Length = 1070
Score = 1237 bits (640), Expect = 0.0
Identities = 667/686 (97%), Gaps = 16/686 (2%)
Strand = Plus / Minus
Query: 1 atttctgttatctgttaaaattattactacttttgggatgcccaaataatatacacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atttctgttatctgttaaaattattactacttttgggatgcccaaataatatacacatgc 718
Query: 61 agattaaaaattttaaatattgtggttgtatattaagatctgacaaatatatatacttag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 agattaaaaattttaaatattgtggttgtatattaagatctgacaaatacatatacttag 658
Query: 121 taaatttttgtatactaaatattttaaacatattgaaattatatctatgggaatattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taaatttttgtatactaaatattttaaacatattgaaattatatctatgggaatattaaa 598
Query: 181 tggttcataaactttaaaatgctaattatttatatgaaatatttgttagtcataatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tggttcataaactttaaaatgctaattatttatatgaaatatttgttagtcataatttat 538
Query: 241 tattaataagatttccttaaactataaaatatgttttatgcatagattttaatacttcct 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tattaataagatttcattaaactataaaatatgttttatgcatagattttaatacttcct 478
Query: 301 tccaaaatgcatgctaaatatagatacttatgtacattttaaaatctcatttatataatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tccaaaatgcatgctaaatatagatacttatgtacattttaaaatctcatttatataatg 418
Query: 361 ggtaacataaaattcatataattgaaaatattcttaatgccaaactctcaaatgtgaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggtaacataaaattcatataattgaaaatattcttaatgccaaactctcaaatgtgaggg 358
Query: 421 tttttattaaggttggggtatatataaattaatagatatatgtttactaaagatctatgt 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttttattaaggttggggtacatataaattaatagatatatgtttactaaagatctatgt 298
Query: 481 taattttcattttcacagtgaggattatagaaaatataatcccaactaacaatagctttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taattttcattttcacagtgaggattatagaaaatataatcccaactaacaatagctttc 238
Query: 541 aaaatctttgtttattagaatgtatcttatgtatgatacacacacacac----------- 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaaatctttgtttattagaatgtatcttatgtatgatacacacacacacacacacacaca 178
Query: 590 -----gcaaacacacacacacacacgctgtctcatgtggctgtgctttttaacacagtgt 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cacacgcaaacacacacacacacacgctgtctcatgtggctgtgctttttaacacagtgt 118
Query: 645 acctagtacccagttaacttataagt 670
||||||||||||||||||||||||||
Sbjct: 117 acctagtacccagttaacttataagt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
