BAC Information

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BAC

Clone NameMSMg01-547C20
Chromosome7 (Build37)
Map Location 5,279,031 - 5,279,708
singlet/doubletsinglet
Overlap geneNlrp2
Upstream geneNcr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150
Downstream geneEG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547C20.T7 (MSMg01no547_c20.b1)MSMg01-547C20.TJ (MSMg01no547_c20.g1)
ACCAG611827AG611828
length725721
length of high quality
(start - end)		679 (42 - 720)634 (71 - 704)
definitionCHROMAT_FILE: MSMg01no547_c20.b1 PHD_FILE: MSMg01no547_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:44 2005CHROMAT_FILE: MSMg01no547_c20.g1 PHD_FILE: MSMg01no547_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATCTTATTCAAGAAAAATGTATCCTGGCTGCCAATAGTCTCTTGGAA
CAGGTGCCCATACTCTGTGAAGAAGACTTCTTGACATTAAAATTGAACCT
AAACAATTTGCATCCCATGGTGTGCAGGCACATCCTCTTTAAGGACAGTT
CCAGTACACACTGTCTCTCTTTCATCTGCCTCGGTATCCAGCAACTCCTG
GCTGCAATAATATTTGTTCAGGAGCTTGGACAGGAAAGCAAGGGTGTCTC
TAAATATAGTATACAGAACATGCTTTCAAGGGAAGCAAGATTAAAAAACC
CTGACCTGTCTGGGCTGCTGCCATTTGTATTTGGCCTCCTGAATGAGACT
CGTATTCAAGAGTTGAAGACCACTTTTGGCTGCCAAATATCAACTGAGGT
CAAGAGAAAATTCCTGGAGTGTGAGTCAGGGGAAAATAAACCCTTACTAT
TACTGATGAATATGCAAGAAATCTTGTCCTGTCTCTATGAATCTCAGGAG
GAGGGGTTTGTGAAGGAAGCCATGGTCCTCTTTGAGGACATCTCCTTGCA
TTTGAAAACCAGCACTGACCTCATTCATGCTTCATTCTGCCTCAAGAACT
CTCAGAACTTGCAGACAATGTCCCTGAAAGTAGAAAAGGCGGTCTTTCCA
GAGAATGTTGCTGCACTAGAGTCCN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATA
GGGTTATTTGATTTACTGGAGTCCATCTTCTTGAATTCTTTATATATATT
GTATTTTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAAT
CTGTTGGTGACCTTTTTGTCTTATTGGCAGTGTCTTTTGCCTTACAGAAG
CTTTGCAATTTTATAAGGTCCCATTTTTTGATTCTTGATCTTACAGCTGT
TCTGTTCAGGAATTTTCACCCTGTGCCCATACATTCGAGGCTTTCCCCCA
CTTTCTCCTTTATAATTTCAGTATCTCTGATTTTATGTGGAGTTCCTTGA
TACACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGC
ATTCTTTGACATGATAACCTCCAGTTGTGTCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTAGATGGTTTTAGCTCCCTTGTCATAGATCATGT
GACCATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTTGAGGATGTGGT
CAAAGAGGAACATCCCTCCATTGGTTGTGGGATTGCAAGCAGGTACAACT
ACTCTGGAAATCAATCTGGCAATTCCTCAGAAAATTGGGCATAGTACTAC
CATAAGATCCAGCAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_c20.b1 MSMg01no547_c20.b1 CHROMAT_FILE:
MSMg01no547_c20.b1 PHD_FILE: MSMg01no547_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:44 2005
         (679 letters)



>mm_chr7_5278828_5279908
          Length = 1081

 Score = 1288 bits (666), Expect = 0.0
 Identities = 675/678 (99%), Gaps = 2/678 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaatt-caaatcttattcaagaaaa-atgtatcctggctgccaatagtctcttggaaca 61
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 881 ggaattccaaatcttattcaagaaaatatgtatcctggctgccaatagtctcttggaaca 822

                                                                       
Query: 62  ggtgcccatactctgtgaagaagacttcttgacattaaaattgaacctaaacaatttgca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggtgcccatactctgtgaagaagacttcttgacattaaaattgaacctaaacaatttgca 762

                                                                       
Query: 122 tcccatggtgtgcaggcacatcctctttaaggacagttccagtacacactgtctctcttt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tcccatggtgtgcaggcacatcctctttaaggacagttccagtacacactgtctctcttt 702

                                                                       
Query: 182 catctgcctcggtatccagcaactcctggctgcaataatatttgttcaggagcttggaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 catctgcctcggtatccagcaactcctggctgcaataatatttgttcaggagcttggaca 642

                                                                       
Query: 242 ggaaagcaagggtgtctctaaatatagtatacagaacatgctttcaagggaagcaagatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggaaagcaagggtgtctctaaatatagtatacagaacatgctttcaagggaagcaagatt 582

                                                                       
Query: 302 aaaaaaccctgacctgtctgggctgctgccatttgtatttggcctcctgaatgagactcg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaaaaaccctgacctgtctgggctgctgccatttgtatttggcctcctgaatgagactcg 522

                                                                       
Query: 362 tattcaagagttgaagaccacttttggctgccaaatatcaactgaggtcaagagaaaatt 421
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tattcaagagttgaagactacttttggctgccaaatatcaactgaggtcaagagaaaatt 462

                                                                       
Query: 422 cctggagtgtgagtcaggggaaaataaacccttactattactgatgaatatgcaagaaat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctggagtgtgagtcaggggaaaataaacccttactattactgatgaatatgcaagaaat 402

                                                                       
Query: 482 cttgtcctgtctctatgaatctcaggaggaggggtttgtgaaggaagccatggtcctctt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttgtcctgtctctatgaatctcaggaggaggggtttgtgaaggaagccatggtcctctt 342

                                                                       
Query: 542 tgaggacatctccttgcatttgaaaaccagcactgacctcattcatgcttcattctgcct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgaggacatctccttgcatttgaaaaccagcactgacctcattcatgcttcattctgcct 282

                                                                       
Query: 602 caagaactctcagaacttgcagacaatgtccctgaaagtagaaaaggcggtctttccaga 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caagaactctcagaacttgcagacaatgtccctgaaagtagaaaaggcggtctttccaga 222

                             
Query: 662 gaatgttgctgcactaga 679
           ||||||||||||||||||
Sbjct: 221 gaatgttgctgcactaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1081
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1071
Effective search space:   716499
Effective search space used:   716499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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