Query= MSMg01no547_p23.b1 MSMg01no547_p23.b1 CHROMAT_FILE:
MSMg01no547_p23.b1 PHD_FILE: MSMg01no547_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:48 2005
(566 letters)
>mm_chr7_56722766_56723731
Length = 966
Score = 636 bits (329), Expect = 0.0
Identities = 354/369 (95%), Gaps = 12/369 (3%)
Strand = Plus / Minus
Query: 6 aatttgttaagactctaagaatttagtagctcttagttttgaaggttttaccacctaaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatttgttaagactctaagaatttagtagctcttagttttgaaggttttaccacctaaaa 298
Query: 66 tgctcccaacttcagcacaaaaatccaaacatctctatgcctatgctttaaatttttata 125
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 297 tgctcccaacttcagcacaaaaatccaaacgtctctatgcctatgctttaaatttttata 238
Query: 126 ttttttcttcttaaatatcttttagtgtgtgtgagggagagaaagagagagaaagagaaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttttttcttcttaaatatcttttagtgtgtgtgagggagagaaagagagagaaagagaaa 178
Query: 186 gagggagggagggggaaagaaaggggacagagagagaggaagggagggagaaaggaaggg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gagggagggagggggaaagaaaggggacagagagagaggaagggagggagaaaggaaggg 118
Query: 246 ggacagagagagagaaagagagagagagagagagagagagagagacagagagagagagag 305
||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 117 ggacagagagaaagaaaaagagagagagagagagagagagagaga--------gagagag 66
Query: 306 agagaggaaagagagggacagagatagggacccagagagagagagagagagaaaggaagg 365
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 65 agagaggaaagagagggacagagatagggacccagagagagagagaga----aaggaagg 10
Query: 366 ggaacagag 374
|||||||||
Sbjct: 9 ggaacagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 142
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_p23.g1 MSMg01no547_p23.g1 CHROMAT_FILE:
MSMg01no547_p23.g1 PHD_FILE: MSMg01no547_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:48 2005
(443 letters)
>mm_chr7_56648819_56649661
Length = 843
Score = 766 bits (396), Expect = 0.0
Identities = 432/444 (97%), Gaps = 2/444 (0%)
Strand = Plus / Plus
Query: 1 aaggcactgggaagatttttaaggtatctgtgggctgtgcatagccttttcacagttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaggcactgggaagatttttaaggtatctgtgggctgtgcatagcctttccacagttgcc 260
Query: 61 caccccccttttttttcacctaacactttctgggagtgtggtttcagccttctggatact 120
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 261 cacccccctttcttttcacctaacactttctgggagtgtgg-ttcagccttctggatatt 319
Query: 121 atcccttgtattttcttggtgtcctaatgctttctctacactgaaagagcgaagtttcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtcccttgtattttcttggtgtcctaatgctttctctacactgaaagagcgaagtttcag 379
Query: 181 atccttcctctggttcatgtgctct-ggggggaatcagagtgggcacggaatgtctctgt 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 380 gtccttcctctggttcatgtgctctgggggggaatcagagtgggcacggaatggctctgt 439
Query: 240 ggaccccaaagaggaagagtatgtggctgcaggcccctgagcaagataggagggtcccct 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 440 ggaccccaaagaggaagagtatgtggctccaggcccctgagcaagataggagggttccct 499
Query: 300 gggtgcatttgcccagccccttcactgacctaggcgctcttgttcaaaagcctggcctta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggtgcatttgcccagccccttcactgacctaggcgctcttgttcaaaagcctggcctta 559
Query: 360 gctgtcttacctcacttgccccatcgtgtggtcctgactgaaatcagtggcaggtatcca 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgtcttacctcactcaccccatcgtgtggtcctgactgaaatcagtggcaggtatcca 619
Query: 420 atgcctgacacgtgcacagccaag 443
||||||||||||||||||||||||
Sbjct: 620 atgcctgacacgtgcacagccaag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
