BAC Information

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BAC

Clone NameMSMg01-548F05
Chromosome7 (Build37)
Map Location 12,881,513 - 12,882,084
singlet/doubletsinglet
Overlap genenone
Upstream geneZscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9
Downstream geneV1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548F05.T7 (MSMg01no548_f05.b1)MSMg01-548F05.TJ (MSMg01no548_f05.g1)
ACCAG612699AG612700
length738744
length of high quality
(start - end)		613 (47 - 659)467 (76 - 542)
definitionCHROMAT_FILE: MSMg01no548_f05.b1 PHD_FILE: MSMg01no548_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:13 2005CHROMAT_FILE: MSMg01no548_f05.g1 PHD_FILE: MSMg01no548_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAACAGAGGAATTTGGAATGGCTAAGAATCACTGGAAATGCTC
AAAGTCCCCAGTCATCAGGGAATTGCAAATCAAAACAACCTGGAGATTCT
ACCTTACACCAGTCAGAATGGCTAAGATAAAAATCTCAGGTGGTAGCACA
TGTTGTCAAGGATGTGGAGAAAGAGAAACACTCCTCCATTGCTGGTGAGA
TTGCAAACTGGTAAATCTCATGTTATAGAATGGAGGTAGACACTAATTTC
TATCCTAGCTAGGGAGCTACTCAAAATTGTTAGTTGTTGGAGAGGGAAAG
ATACAGATTTCTCTAACATAGTCCCTCATAATAAGACAATATTCTTGAAA
GATCATGTATGCAAGAGTATTTAGATATATCCCATTGTTCTTCGCAGGGC
TGTTTTTAAAGCGCAGAATGTTAGGTGGGTAATGAATGAATGATGGCATT
CAGAAGAATTGGGGAAATGCATGAATATTTTAAAAATAGCTCATACCAAA
ACTCCCAAAGAACTAATATAAATTAAAAATTATGCAGTTTAATATTTGCC
CAAATGTTTTTTTTTGTACTAATAAGAAAAGATAGATATTTTATTTTATT
ATATTGTTTGTCTTCACTGAGAATTTTGTCTTAGGTTTGTGGAGAGGTCT
CAATTTACTTCTAGTATAGAAAGTATAACCCCTTCCCC

GCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGA
GTACCAGTGAGTACAGCTTTACGAGGTAAGTCTGATCTTGAACTTTCTAA
GGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTTTCAAG
ATATGTTTGGCCTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTT
TTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTAGAGGAAAT
TCAGGACAAGCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGA
GGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAA
CCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAGAGATTAGAAG
AAAAAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCGGAGGTCTCTA
GGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTCGGGGAGCCAGCTCTT
AGTAGCTCTGAAGCAGGTGAAGAATCCTCCTCTGAGGAAACAGACTGGGA
GGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCCAGGAAAGTGC
TAGCTAAACATTTAAGGAAGCCCATAAACTGTCTGGGCAAAGGCCAGTTT
GCTTGATTGGCCCTCTAGTGAAGTCCGGCTTCAAGGTTCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_f05.b1 MSMg01no548_f05.b1 CHROMAT_FILE:
MSMg01no548_f05.b1 PHD_FILE: MSMg01no548_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:13 2005
         (613 letters)



>mm_chr7_12881072_12882084
          Length = 1013

 Score = 1098 bits (568), Expect = 0.0
 Identities = 571/572 (99%)
 Strand = Plus / Minus

                                                                        
Query: 42   actggaaatgctcaaagtccccagtcatcagggaattgcaaatcaaaacaacctggagat 101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 actggaaatgctcaaagtccccagtcatcagggaattgcaaatcaaaacaacctggagat 954

                                                                        
Query: 102  tctaccttacaccagtcagaatggctaagataaaaatctcaggtggtagcacatgttgtc 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  tctaccttacaccagtcagaatggctaagataaaaatctcaggtggtagcacatgttgtc 894

                                                                        
Query: 162  aaggatgtggagaaagagaaacactcctccattgctggtgagattgcaaactggtaaatc 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  aaggatgtggagaaagagaaacactcctccattgctggtgagattgcaaactggtaaatc 834

                                                                        
Query: 222  tcatgttatagaatggaggtagacactaatttctatcctagctagggagctactcaaaat 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  tcatgttatagaatggaggtagacactaatttctatcctagctagggagctactcaaaat 774

                                                                        
Query: 282  tgttagttgttggagagggaaagatacagatttctctaacatagtccctcataataagac 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 773  tgttagttgttggagagggaaagatacagatttctctaacatagtccctcaaaataagac 714

                                                                        
Query: 342  aatattcttgaaagatcatgtatgcaagagtatttagatatatcccattgttcttcgcag 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  aatattcttgaaagatcatgtatgcaagagtatttagatatatcccattgttcttcgcag 654

                                                                        
Query: 402  ggctgtttttaaagcgcagaatgttaggtgggtaatgaatgaatgatggcattcagaaga 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  ggctgtttttaaagcgcagaatgttaggtgggtaatgaatgaatgatggcattcagaaga 594

                                                                        
Query: 462  attggggaaatgcatgaatattttaaaaatagctcataccaaaactcccaaagaactaat 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  attggggaaatgcatgaatattttaaaaatagctcataccaaaactcccaaagaactaat 534

                                                                        
Query: 522  ataaattaaaaattatgcagtttaatatttgcccaaatgtttttttttgtactaataaga 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  ataaattaaaaattatgcagtttaatatttgcccaaatgtttttttttgtactaataaga 474

                                            
Query: 582  aaagatagatattttattttattatattgttt 613
            ||||||||||||||||||||||||||||||||
Sbjct: 473  aaagatagatattttattttattatattgttt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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