BAC Information

Click to search

BAC

Clone NameMSMg01-548H01
Chromosome7 (Build37)
Map Location 103,364,135 - 103,540,025
singlet/doubletdoublet
Overlap geneOdz4, LOC670727
Upstream geneLOC666823, Frda-ps, EG666836
Downstream geneLOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548H01.T7 (MSMg01no548_h01.b1)MSMg01-548H01.TJ (MSMg01no548_h01.g1)
ACCAG612785AG612786
length739736
length of high quality
(start - end)		542 (46 - 587)537 (73 - 609)
definitionCHROMAT_FILE: MSMg01no548_h01.b1 PHD_FILE: MSMg01no548_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:21 2005CHROMAT_FILE: MSMg01no548_h01.g1 PHD_FILE: MSMg01no548_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,364,135 - 103,364,671)(103,539,489 - 103,540,025)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACAATATAGACAAAATCAAAATAAGCTCAATTGCTGTTGGGGT
TGCATCTTGAGACTCTATGAGTACAGAAAAAGTGAGGTCATATAGTATTT
TGAATGCTTGTTTATATTTAGTGATAAAGCATATAGATCTACCCTGTACC
CTGTTGTAACTCCCCTCCCTCACAGCAAAAGTTCCAGTGGCCAGATGCTT
TAATATAGAGCCCAGATGTTTTAATATAGCGCGCTTTCATTAAGCCAGTC
CACACTTCTTGATTTCTTGTTTACGTTTAGTATTTTATTGTAGCATAACT
ACAGCAGTCAACTTTGTACATTTCACAGAATTTTAGCGTTTCCTCAAGAC
AGATTCCTAGAAAGTAGGGTTGTAGAGTCAAAGGCATGTGCTGTACTGAA
GCTCTGTCACGCTTGAGAAGCAGAAGGATAAACTGTGTTGTCTACATCTT
TTTAACCAGAATCTGTTTACTTTCCAGTCCCCTCTAAGCTTGGGAACTGA
AGTGGTGGGGGAGGGGAGGGAGTCACATGCAAACCTCATAAAAAGAATCC
GAATAACTTTGCAATGTTTTACTGAACTGATAGGAAATTCCTTTTTTTTT
TTCTTTCCCTCCAAGATATTTTTCTTCCCTGGTTGTCTTGAAATGACTTT
CCCTGAGGCTTTCACCAGCATTGGAGTTGAATATGTAAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGCTAAGGATATCCTTGGATT
TCTCATTCTTCTCCCTCTGTCTCCAGAGTACTGGGATAACAACTATGGAC
CATACCATTTAGCTTATGAGGTGCCAGGAATTCAACTGAGGACTTCCTGC
TGACAAGGCAAGCTTCGTTCTGCCTCCACTACAACCCCGATTTGTCCTGA
CCATCTGCCTAGCACAATAGACTTGTTGGAAAAGGAGGATGGAAGGCTAG
GATACCTATCTCACTCATTTTCTATCCTTCTGCCTACTGTCTGTCTGTCT
GTCTGTCTGTCTGAAGCCTGCTGCAAGGAGGCAGGTGATTGACAAAAGCC
TCCTGGATGCTTTTGTCTTGGGCTGGTGCAAGACAGTGAAAGCTGTTAAT
GCCATCTCCCTCACTGGAGCTTTGGCCTAACCTTGTGATTTCTGACTCAT
TGTGAAAACAGGGCCTTTGATGAGCTCAGGAAAGGAAAGCCAAGTTCACA
GCCACATCACAAGCCACCCCTGGGCTCAGTTCATCTCTATGGACCGAAAA
AAAACCAGCAATGATAAAGAGCAAGGGGGTCCGTGTTCAGGAACTTAGGG
GTGAAATTGAGTGTCTCTATTATCATACAGTATGGGAAGCATCACTCCCT
TTAAGGAGAATGCTTACAGGGACATGGTTGCTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_h01.b1 MSMg01no548_h01.b1 CHROMAT_FILE:
MSMg01no548_h01.b1 PHD_FILE: MSMg01no548_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:21 2005
         (542 letters)



>mm_chr7_103363930_103364871
          Length = 942

 Score =  992 bits (513), Expect = 0.0
 Identities = 531/537 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcagacaatatagacaaaatcaaaataagctcaattgctgttggggttgcatcttga 65
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcagacaatagagacaaagtcaaaataagctcaattgctgttggggttgcatcttga 265

                                                                       
Query: 66  gactctatgagtacagaaaaagtgaggtcatatagtattttgaatgcttgtttatattta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gactctatgagtacagaaaaagtgaggtcatatagtattttgaatgcttgtttatattta 325

                                                                       
Query: 126 gtgataaagcatatagatctaccctgtaccctgttgtaactcccctccctcacagcaaaa 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 gtgataaagcatatagatctaccctgtaccctgttgtaactcccctccctcacagcaaca 385

                                                                       
Query: 186 gttccagtggccagatgctttaatatagagcccagatgttttaatatagcgcgctttcat 245
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttccagtggccagatgttttaatatagagcccagatgttttaatatagcgcgctttcat 445

                                                                       
Query: 246 taagccagtccacacttcttgatttcttgtttacgtttagtattttattgtagcataact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 446 taagccagtccacacttcttgatttcttgtttacgtttagtattttattgtagcataacc 505

                                                                       
Query: 306 acagcagtcaactttgtacatttcacagaattttagcgtttcctcaagacagattcctag 365
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 acagcagtcaactttgtacatttcacagaattttagcgtttcctcaagacggattcctag 565

                                                                       
Query: 366 aaagtagggttgtagagtcaaaggcatgtgctgtactgaagctctgtcacgcttgagaag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaagtagggttgtagagtcaaaggcatgtgctgtactgaagctctgtcacgcttgagaag 625

                                                                       
Query: 426 cagaaggataaactgtgttgtctacatctttttaaccagaatctgtttactttccagtcc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagaaggataaactgtgttgtctacatctttttaaccagaatctgtttactttccagtcc 685

                                                                    
Query: 486 cctctaagcttgggaactgaagtggtgggggaggggagggagtcacatgcaaacctc 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cctctaagcttgggaactgaagtggtgggggaggggagggagtcacatgcaaacctc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_h01.g1 MSMg01no548_h01.g1 CHROMAT_FILE:
MSMg01no548_h01.g1 PHD_FILE: MSMg01no548_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:21 2005
         (537 letters)



>mm_chr7_103539421_103540357
          Length = 937

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagctaaggatatccttggatttctcattcttctccctctgtctccagagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 actttgtagctaaggatatccttggatttctcattcttctccctctgtctccagagtact 546

                                                                       
Query: 61  gggataacaactatggaccataccatttagcttatgaggtgccaggaattcaactgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gggataacaactatggaccataccatttagcttatgaggtgccaggaattcaactgagga 486

                                                                       
Query: 121 cttcctgctgacaaggcaagcttcgttctgcctccactacaaccccgatttgtcctgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttcctgctgacaaggcaagcttcgttctgcctccactacaaccccgatttgtcctgacc 426

                                                                       
Query: 181 atctgcctagcacaatagacttgttggaaaaggaggatggaaggctaggatacctatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctgcctagcacaatagacttgttggaaaaggaggatggaaggctaggatacctatctc 366

                                                                       
Query: 241 actcattttctatccttctgcctactgtctgtctgtctgtctgtctgtctgaagcctgct 300
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actcactttctatccctctgcctactgtctgtctgtctgtctgtctgtctgaagcctgct 306

                                                                       
Query: 301 gcaaggaggcaggtgattgacaaaagcctcctggatgcttttgtcttgggctggtgcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcaaggaggcaggtgattgacaaaagcctcctggatgcttttgtcttgggctggtgcaag 246

                                                                       
Query: 361 acagtgaaagctgttaatgccatctccctcactggagctttggcctaaccttgtgatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acagtgaaagctgttaatgccatctccctcactggagctttggcctaaccttgtgatttc 186

                                                                       
Query: 421 tgactcattgtgaaaacagggcctttgatgagctcaggaaaggaaagccaagttcacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgactcattgtgaaaacagggcctttgatgagctcaggaaaggaaagccaagttcacagc 126

                                                                    
Query: 481 cacatcacaagccacccctgggctcagttcatctctatggaccgaaaaaaaaccagc 537
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 125 cacatcacaagccacccctgggctcagttcatctctatggatcgaaaaaaaaccagc 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |