Query= MSMg01no548_h19.b1 MSMg01no548_h19.b1 CHROMAT_FILE:
MSMg01no548_h19.b1 PHD_FILE: MSMg01no548_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(589 letters)
>mm_chr7_12780054_12781042
Length = 989
Score = 1036 bits (536), Expect = 0.0
Identities = 547/553 (98%), Gaps = 5/553 (0%)
Strand = Plus / Minus
Query: 38 catgtgggatggaatgaacccagcaaggatgaaacagcctggtcaatatgaatttgattt 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 catgtgggatggaatgaacccagcaaggatgaaacagcctggtcaatatgaatttgattt 930
Query: 98 gtcacatctcatggccaaagcatgtgttgtcttcagcaagagggtgttgccataaatttc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtcacatctcatggccaaagcatgtgttgtcttcagcaagagggtgttgccataaatttc 870
Query: 158 tagttggtaactaacagcactggcaataatctctattgttt-gggggggggggctctcca 216
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 869 tagttggtaactaacagcactggcaataatctctattgtttggggggggggggctctcca 810
Query: 217 aaaactcaagggaggcatctcacaagttgctttgtaggtggtaacctatggcttctaaga 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaaactcaagggaggcatctcacaagttgctttgtaggtggtaacctatggcttctaaga 750
Query: 277 tgaacataatattccgtatagcataacccaaaagaaacactcatacagacagacattcac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgaacataatattccgtatagcataacccaaaagaaacactcatacagacagacattcac 690
Query: 337 agacctatcacatggcattttcatggattcttagtgttagttatctttccccacatctcc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agacctatcacatggcattttcatggattcttagtgttagttatctttccccacatctcc 630
Query: 397 atccctggtccatccttatccattttccctcatccatttctggaatgattaaaatatatc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atccctggtccatccttatccattttccctcatccatttctggaatgattaaaatatatc 570
Query: 457 atgatcataaatgtttgtggctccccataaacagaaatgtatatgagcatgtatgtacgt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atgatcataaatgtttgtggctccccataaacagaaatgtatatgagcatgtatgtacgt 510
Query: 517 acacncatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatatgcatcc 576
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acacgca----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatatgcatcc 454
Query: 577 ttgttgtttcttt 589
|||||||||||||
Sbjct: 453 ttgttgtttcttt 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_h19.g1 MSMg01no548_h19.g1 CHROMAT_FILE:
MSMg01no548_h19.g1 PHD_FILE: MSMg01no548_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:25 2005
(536 letters)
>mm_chr7_12571831_12572766
Length = 936
Score = 992 bits (513), Expect = 0.0
Identities = 530/539 (98%), Gaps = 7/539 (1%)
Strand = Plus / Plus
Query: 1 aatgtaaaaattcatcatttggctgaactgatagttcctgctgatgaaattctggatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtaaaaattcatcatttggctgaactgatagttcctgctgatgaaattctggatttt 260
Query: 61 aatatgttaaagcaaccttgatcagaagaagcatccatatgaaaatagttgttttcacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgttaaagcaaccttgatcagaagaagcatccatatgaaaatagttgttttcacga 320
Query: 121 ggattt---aaaaaaaaaaaaaaaacatgctcaagggagaaccgctaccctctcagagaa 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttaaaaaaaaaaaaaaaaaaacatgctcaagggagaaccgctaccctctcagagaa 380
Query: 178 gagacgcagatgggaggggggactggggggaggagaggggaaagtggggagcatccatca 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gagacgcagatgggaggggggactgggggaaggagaggggaaagtggggagcatccatca 440
Query: 238 ggatgtaaaataaataaatagacagacagacagacagacagacagacaggcagatagggg 297
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ggatgtaaaataaataaatagacagacagacagacagacagacaga----cagatagggg 496
Query: 298 aaagcaccatatgccactgactgtaaccatttagttcccgctaactgacgttttgtttac 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 aaagcaccatatgccactgactgtaaccatttagttcccgctaactgatgttttgtttac 556
Query: 358 attagtgcttagaactgattttcacctactggaagcaacataaaatcatgacactagtaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attagtgcttagaactgattttcacctactggaagcaacataaaatcatgacactagtaa 616
Query: 418 gataggaattgaaaaaaattaacatttgtgtatacagacttctaacccttgagaaaagga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gataggaattgaaaaaaattaacatttgtgtatacagacttctaacccttgagaaaagga 676
Query: 478 gtcttttagtcacatctcttatatcccaagctcccttgggacataagaacttgatatgc 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtcttttagtcacatctcttatatcccaagctcccttgggacataagaacttgatatgc 735
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 504 caagctcccttgggacataagaacttgatatgc 536
|||||||||||||||||||||||||||||||||
Sbjct: 1 caagctcccttgggacataagaacttgatatgc 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
