BAC Information

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BAC

Clone NameB6Ng01-001E11
Chromosome8 (Build37)
Map Location 53,575,896 - 53,725,176
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E11.bB6Ng01-001E11.g
ACCDH839648DH839649
length9921,114
definitionDH839648|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E11, 5' end.DH839649|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,575,896 - 53,576,892)(53,724,057 - 53,725,176)
sequence
gtagctttataggtatgattcactgaattacagaactaatttatatattt
attgtggtgtttaggattaaactctagactttgcatatacttgaaaagta
tcctcactgactttccacactaaacctttaaattttcaatacatgatttt
gctctgttctagcatggcctcaaactttgaatccattgtaactagtcttt
caatgtagggatttgagacatgtgtttaattagaaaaatgactcactttt
ttctaaataaaataaacatgttttgaatgtttgaattattccatttttta
aaaagaaaccacacagctgttatagtcattggaactgaggaataataata
gaaaaactaaacaaaacaaaacttgacattttgttcagagtaagcaaaca
ttcaaattagtgacaggtaagcatggggaagcttcacagatagaagagag
ggaagtcacttgaacttttactggaaaaatgcatctgcatatgtatgtat
atatatatatatatatatatatgtatgtatatatatatatacatatttat
atgaattattttgccttgctatctgttatctacaattttcagaaatgtga
atttgcttaaagctatttactatgttgtgggagtggctgtcccttcatat
ttacagctcatgcctacagccatgggaaaaagattaagcagagcatacat
acaaagggctatgaatcttggagactatctgtaaagtcatcctatactga
tactataatcaatttcacatgctttaagtagttatttaaatttctataaa
ctgttagcatgcattttaaggactttttttcaagatgaagtttccaagta
cagtaaaaatttttcactggtaaatggaattactgacttcaaagaaaaga
aactgctttgaaataatgatcaggaagtaagtcttcaatttatttccacc
ctgaaatttaatctcagctccatatatcaaaacattggttgg
gaattctttcataactccctagatatgtatcttcaattttcacatgggcc
attttttttttcagctaacgttttgattgaatggcgtgtcattgtctact
aattcttccctgatgcaattatgaacctttttactttgggttctagagcg
tccattaatttcatgtaaaccaaaagcttaatcacctgatatacagtgac
tatttccaaatctgttattttgaatatttcctttatgattttcttctagg
gtcttcttttcctgaaatatccaaattagtaaaatttattatctcttaaa
ctattattaaccagaatttctgccttagatgaagttcagaaagactcccc
accttctcatggccttggtcagaattctgagatctcctcaaatctctata
tctaaccaccatgcaaatgataattaaaatgtaatattcctataacaact
ataatttacatgtttgcttctttttttcatatttttcaatatgtagccat
ttgtttcaaataagtgtggtcttcaggttatggctttgatcaactcaaaa
ttgattttccttcatgctaaaaagcaacctacttgtgttcttgatattgt
caatgcaaactagccacgttactaatcaaacatacaagttaaatttcttc
ctgtcctttgcacttgtctttttgtttttttttttgttttgttttgtttt
gttttgttttgtttttgtaactggagagttgcttcacattcctttctcat
gtcatgtttctaaacacttttaactcttgagggttaggtacatcttctct
gactgaacccagacccagcagtcctccgtagtatgtgtgttggaggcctc
atatcagctggtgtatgctgcctggttggtggtccagtgtttgagagata
tcgaggggtccatgttaattgagactgctggttctactaatctgaatcta
gttcaactctttaacgatcaattaggacaagatttttctacgctgtaact
ttttttttttctttaaatttatttttatttaattcatttttttacactcc
aatatcattccccacccctcccaatcatcctctgactggtatggcataca
cacctcctcctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53575896_53576892
seq2: B6Ng01-001E11.b_54_1045

seq1  GTAGCTTTATAGGTATGATTCACTGAATTACAGAACTAATTTATATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTATAGGTATGATTCACTGAATTACAGAACTAATTTATATATTT  50

seq1  ATTGTGGTGTTTAGGATTAAACTCTAGACTTTGCATATACTTGAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTGTTTAGGATTAAACTCTAGACTTTGCATATACTTGAAAAGTA  100

seq1  TCCTCACTGACTTTCCACACTAAACCTTTAAATTTTCAATACATGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGACTTTCCACACTAAACCTTTAAATTTTCAATACATGATTTT  150

seq1  GCTCTGTTCTAGCATGGCCTCAAACTTTGAATCCATTGTAACTAGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTCTAGCATGGCCTCAAACTTTGAATCCATTGTAACTAGTCTTT  200

seq1  CAATGTAGGGATTTGAGACATGTGTTTAATTAGAAAAATGACTCACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGGGATTTGAGACATGTGTTTAATTAGAAAAATGACTCACTTTT  250

seq1  TTCTAAATAAAATAAACATGTTTTGAATGTTTGAATTATTCCATTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATAAAATAAACATGTTTTGAATGTTTGAATTATTCCATTTTTTA  300

seq1  AAAAGAAACCACACAGCTGTTATAGTCATTGGAACTGAGGAATAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACCACACAGCTGTTATAGTCATTGGAACTGAGGAATAATAATA  350

seq1  GAAAAACTAAACAAAACAAAACTTGACATTTTGTTCAGAGTAAGCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTAAACAAAACAAAACTTGACATTTTGTTCAGAGTAAGCAAACA  400

seq1  TTCAAATTAGTGACAGGTAAGCATGGGGAAGCTTCACAGATAGAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTAGTGACAGGTAAGCATGGGGAAGCTTCACAGATAGAAGAGAG  450

seq1  GGAAGTCACTTGAACTTTTACTGGAAAAATGCATCTGCATATGTATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACTTGAACTTTTACTGGAAAAATGCATCTGCATATGTATGTAT  500

seq1  ATATATATATATATATATATATGTATGTATATATATATATACATATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATGTATGTATATATATATATACATATTTAT  550

seq1  ATGAATTATTTTGCCTTGCTATCTGTTATCTACAATTTTCAGAAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATTTTGCCTTGCTATCTGTTATCTACAATTTTCAGAAATGTGA  600

seq1  ATTTGCTTAAAGCTATTTACTATGTTGTGGGAGTGGCTGTCCCTTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTAAAGCTATTTACTATGTTGTGGGAGTGGCTGTCCCTTCATAT  650

seq1  TTACAGCTCATGCCTACAGCCATGGGAAAAAGATTAAGCAGAGCATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTCATGCCTACAGCCATGGGAAAAAGATTAAGCAGAGCATACAT  700

seq1  ACAAAGGGCTATGAATCTTGGAGACTATCTGTAAAGTCATCCTATACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGCTATGAATCTTGGAGACTATCTGTAAAGTCATCCTATACTGA  750

seq1  TACTATAATCAATTTCACATGCTTTAAGTAGTTATTTAAATTTCTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATCAATTTCACATGCTTTAAGTAGTTATTTAAATTTCTATAAA  800

seq1  CTGTTAGCATGCATTTTAAGGACTTTTTTTCAAGATGAAGTTTCCAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCATGCATTTTAAGGACTTTTTTTCAAGATGAAGTTTCCAAGTA  850

seq1  CAGTAAAAAATTTTCCACTGGTAAATTGAATTACTGACTTCAAAGAAAAA  900
      |||| ||||||||| ||||||||||| |||||||||||||||||| ||||
seq2  CAGT-AAAAATTTTTCACTGGTAAATGGAATTACTGACTTCAAAG-AAAA  898

seq1  GAAACTGCTTTGAAATAATGATCAGGAAGTAAGTCTTCAATTTATTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCTTTGAAATAATGATCAGGAAGTAAGTCTTCAATTTATTTCCA  948

seq1  ACCTGAAAATTTAAATCTCAGCTCCATTATATCAAAACATTGATTGG  997
       |||||||  || ||||||||||||| ||||||||||||||| ||||
seq2  CCCTGAAA--TTTAATCTCAGCTCCA-TATATCAAAACATTGGTTGG  992

seq1: chr8_53724057_53725176
seq2: B6Ng01-001E11.g_66_1179 (reverse)

seq1  GGTAGGGAGGAGGTGTGTGATGGCA-AGCAGTCAGAGGATGGATGGGGAG  49
      |||| ||||||||||||| ||| || | |||||||||||| ||| |||||
seq2  GGTA-GGAGGAGGTGTGT-ATGCCATACCAGTCAGAGGAT-GATTGGGAG  47

seq1  GGGTGGGGAATGGAATATGGAGTGTAAAAAAATGAATTAAAATAAAATTA  99
      ||||||||||||  || ||||||||||||||||||||| |||||||| ||
seq2  GGGTGGGGAATGATAT-TGGAGTGTAAAAAAATGAATT-AAATAAAAATA  95

seq1  AATTTAAAAAGAAAAAAAAAAGTTACAGCCTAGGAAAAATCTTGT-CTAA  148
      |||||||| | |||||||||||||||||| || |||||||||||| ||||
seq2  AATTTAAAGA-AAAAAAAAAAGTTACAGCGTA-GAAAAATCTTGTCCTAA  143

seq1  TTGATCGTTAAAGAGTTGAACTAAGATTCAGATTAGTAGAACCAGCAGTC  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGATCGTTAAAGAGTTGAACT-AGATTCAGATTAGTAGAACCAGCAGTC  192

seq1  TCAATTAACATGGACCCCTCGATATCTCTCAAACACTGGACCACCAACCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAACATGGACCCCTCGATATCTCTCAAACACTGGACCACCAACCA  242

seq1  GGCAGCATACACCAGCTGATATGAGGCCTCCAACACACATACTACGGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATACACCAGCTGATATGAGGCCTCCAACACACATACTACGGAGG  292

seq1  ACTGCTGGGTCTGGGTTCAGTCAGAGAAGATGTACCTAACCCTCAAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGTCTGGGTTCAGTCAGAGAAGATGTACCTAACCCTCAAGAGT  342

seq1  TAAAAGTGTTTAGAAACATGACATGAGAAAGGAATGTGAAGCAACTCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTTTAGAAACATGACATGAGAAAGGAATGTGAAGCAACTCTCC  392

seq1  AGTTACAAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAAAAACA  442

seq1  AAAAGACAAGTGCAAAGGACAGGAAGAAATTTAACTTGTATGTTTGATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAGTGCAAAGGACAGGAAGAAATTTAACTTGTATGTTTGATTA  492

seq1  GTAACGTGGCTAGTTTGCATTGACAATATCAAGAACACAAGTAGGTTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTGGCTAGTTTGCATTGACAATATCAAGAACACAAGTAGGTTGCT  542

seq1  TTTTAGCATGAAGGAAAATCAATTTTGAGTTGATCAAAGCCATAACCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATGAAGGAAAATCAATTTTGAGTTGATCAAAGCCATAACCTGA  592

seq1  AGACCACACTTATTTGAAACAAATGGCTACATATTGAAAAATATGAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACACTTATTTGAAACAAATGGCTACATATTGAAAAATATGAAAAA  642

seq1  AAGAAGCAAACATGTAAATTATAGTTGTTATAGGAATATTACATTTTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAACATGTAAATTATAGTTGTTATAGGAATATTACATTTTAAT  692

seq1  TATCATTTGCATGGTGGTTAGATATAGAGATTTGAGGAGATCTCAGAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGCATGGTGGTTAGATATAGAGATTTGAGGAGATCTCAGAATT  742

seq1  CTGACCAAGGCCATGAGAAGGTGGGGAGTCTTTCTGAACTTCATCTAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAAGGCCATGAGAAGGTGGGGAGTCTTTCTGAACTTCATCTAAGG  792

seq1  CAGAAATTCTGGTTAATAATAGTTTAAGAGATAATAAATTTTACTAATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTCTGGTTAATAATAGTTTAAGAGATAATAAATTTTACTAATTT  842

seq1  GGATATTTCAGGAAAAGAAGACCCTAGAAGAAAATCATAAAGGAAATATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCAGGAAAAGAAGACCCTAGAAGAAAATCATAAAGGAAATATT  892

seq1  CAAAATAACAGATTTGGAAATAGTCACTGTATATCAGGTGATTAAGCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACAGATTTGGAAATAGTCACTGTATATCAGGTGATTAAGCTTT  942

seq1  TGGTTTACATGAAATTAATGGACGCTCTAGAACCCAAAGTAAAAAGGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTACATGAAATTAATGGACGCTCTAGAACCCAAAGTAAAAAGGTTC  992

seq1  ATAATTGCATCAGGGAAGAATTAGTAGACAATGACACGCCATTCAATCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCATCAGGGAAGAATTAGTAGACAATGACACGCCATTCAATCAA  1042

seq1  AACGTTAGCTGAAAAAAAAAATGGCCCATGTGAAAATTGAAGATACATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTAGCTGAAAAAAAAAATGGCCCATGTGAAAATTGAAGATACATAT  1092

seq1  CTAGGGAGTTATGAAAGAATTC  1120
      ||||||||||||||||||||||
seq2  CTAGGGAGTTATGAAAGAATTC  1114