BAC Information

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BAC

Clone NameB6Ng01-001P12
Chromosome8 (Build37)
Map Location 17,924,803 - 17,925,974
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P12.bB6Ng01-001P12.g
ACCDH840131DH840132
length1,2181,163
definitionDH840131|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P12, 5' end.DH840132|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactaacaggaaccaagaccactcaccatcatcagaacccagca
ctcccactttgcccagtccaggacatcctaacacacctgaaaaggtagac
ctggatttaaaagcatttctcatgatgatggtagaggacataaagaagga
atttaataactcacttaaagaaatacaggagaacactgctaaagagttac
aagtccttaaagaaaaacatgaaaacacaaccaaacaggtagaagtcctt
atagaaaaacaggaaaacacatctaaacaggtgatagaaatgaacaaaac
catactagacctaaaaagggaagtagacacaataaagaaaacccaaagtg
aggcaacgctggagatagaaaccctaggaaagaaatctggaaccatagat
gccagcatcagcaacagaatacaagagatggaagagagaatctcaggcgc
agaagattccatagagaacatcggcacaacaatcaaagaaaatggaaaat
gcaaaaagatcctaactcaaaacatccaggaaatccaggacacaataaga
agaccaaacctacgcataataggagtggatgagaatgaagattttgaact
caaaggaccagcaaacatcttcaacaaaattattgaagaaaacttcccaa
atctaaagaaagagatgcccatgaacatacaagaagcctacagaactcca
aatagactggaccagaaaagaaattcctcccgacacataataatcagaac
atcaaatgcactaaataaagatagaatactaaaagcagtaagggaaaaag
gtcaagtaaaatataaaggcaagcctatcagaattacaccagatttttca
ccagagactatgaaagccagaagagcctggacagatgttatacagacact
aagagaacacaaattccagcccagactactatactcaggcgaaactctca
attaccatagatgggagaaaccaaaatatttccacgacaaaacctaaatt
cacccattatctctccacgaaatcagccctttcaaagataataacggaaa
aaaccaatacaagggatggggaccacgcctaggaagacaggagattattc
cctaacaaactaagaagacagcacaagaaacggagtccaacttacaacta
aatacgggagcacatactttctaattctctaattcatggcctcatctcga
taaagagagacttggaag
gaattctaaattctgtctgccctttggcaaatatgaaagtgattgatatg
ctgagtattgagttgaactcatttgataaaatgtttttgacaaagcagta
ttagtttgatttaatttattggtattttcctttagattaatctttttaaa
agttgtcttgtttaagaaatccataccaaaactaatttgtaaaatagatg
tctatgtgttactaaaacgtgacgtatttcctaacacatagcctacttgc
atagtgccactagcttaacaattatggtttcctcctatcctgcagtacaa
tccttgccagaagagaaatcaaataacactgggattcttgtcctttctct
ctgcttctctacccaggccaaaaccacaaacaatttaaatgaatccacct
gtttaatttgttgaggtttttgtcttttactgtttatcgtaatgctaagg
gctaacttccaagatttggggtctgcacaaagcttgagggaccccgcccc
cattaattctgattggtaaataaagatgacaccagccagtagttggggag
aagagagataggtgaggtttagatttctctgctgagagcacaaggaagga
gcccagaagggggctaaaatgggatagagaagcaaggagagtgccctggg
ctctgggtctagagaacatggcccagagggctgactaattgtagttaaga
acagccaagatggaacatagcaaatagttagtgataattttggattatcg
atggggaagtagattctaagtgcatggagggtagccagctgcccagctct
tgtgcatattaaaataaatggactctgtgtgtctttcatcctggaatata
aatggttaaaggtaggaggaaccttgcacccaggattttaaagttttttt
tttttacaacattaacaaaccttttccagcctcaaagtccccccagtgtt
gtcttactcaatttgacccttaattgtcatatgaattataagtacagcag
tgtcaataatgaatgatacaagttaacagtgagcctggtcaatcacaagt
ttgagccacatgcatatttgtttccttacctcaaatcctacttacatctt
ttacccttcatagtttatttctctcacttttcttcatccatatgctggga
ggggtggtaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17924803_17925974
seq2: B6Ng01-001P12.g_68_1230

seq1  GAATTCTAAATTCTGTCTGCCCTTTGGCAAATATGAAAGTGATTGATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTCTGTCTGCCCTTTGGCAAATATGAAAGTGATTGATATG  50

seq1  CTGAGTATTGAGTTGAACTCATTTGATAAAATGTTTTTGACAAAGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATTGAGTTGAACTCATTTGATAAAATGTTTTTGACAAAGCAGTA  100

seq1  TTAGTTTGATTTAATTTATTGGTATTTTCCTTTAGATTAATCTTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGATTTAATTTATTGGTATTTTCCTTTAGATTAATCTTTTTAAA  150

seq1  AGTTGTCTTGTTTAAGAAATCCATACCAAAACTAATTTGTAAAATAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTGTTTAAGAAATCCATACCAAAACTAATTTGTAAAATAGATG  200

seq1  TCTATGTGTTACTAAAACGTGACGTATTTCCTAACACATAGCCTACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGTTACTAAAACGTGACGTATTTCCTAACACATAGCCTACTTGC  250

seq1  ATAGTGCCACTAGCTTAACAATTATGGTTTCCTCCTATCCTGCAGTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCCACTAGCTTAACAATTATGGTTTCCTCCTATCCTGCAGTACAA  300

seq1  TCCTTGCCAGAAGAGAAATCAAATAACACTGGGATTCTTGTCCTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCAGAAGAGAAATCAAATAACACTGGGATTCTTGTCCTTTCTCT  350

seq1  CTGCTTCTCTACCCAGGCCAAAACCACAAACAATTTAAATGAATCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCTACCCAGGCCAAAACCACAAACAATTTAAATGAATCCACCT  400

seq1  GTTTAATTTGTTGAGGTTTTTGTCTTTTACTGTTTATCGTAATGCTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTGTTGAGGTTTTTGTCTTTTACTGTTTATCGTAATGCTAAGG  450

seq1  GCTAACTTCCAAGATTTGGGGTCTGCACAAAGCTTGAGGGACCCCGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTCCAAGATTTGGGGTCTGCACAAAGCTTGAGGGACCCCGCCCC  500

seq1  CATTAATTCTGATTGGTAAATAAAGATGACACCAGCCAGTAGTTGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTCTGATTGGTAAATAAAGATGACACCAGCCAGTAGTTGGGGAG  550

seq1  AAGAGAGATAGGTGAGGTTTAGATTTCTCTGCTGAGAGCACAAGGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGATAGGTGAGGTTTAGATTTCTCTGCTGAGAGCACAAGGAAGGA  600

seq1  GCCCAGAAGGGGGCTAAAATGGGATAGAGAAGCAAGGAGAGTGCCCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAGGGGGCTAAAATGGGATAGAGAAGCAAGGAGAGTGCCCTGGG  650

seq1  CTCTGGGTCTAGAGAACATGGCCCAGAGGGCTGACTAATTGTAGTTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTCTAGAGAACATGGCCCAGAGGGCTGACTAATTGTAGTTAAGA  700

seq1  ACAGCCAAGATGGAACATAGCAAATAGTTAGTGATAATTTTGGATTATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGATGGAACATAGCAAATAGTTAGTGATAATTTTGGATTATCG  750

seq1  ATGGGGAAGTAGATTCTAAGTGCATGGAGGGTAGCCAGCTGCCCAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAGTAGATTCTAAGTGCATGGAGGGTAGCCAGCTGCCCAGCTCT  800

seq1  TGTGCATATTAAAATAAATGGACTCTGTGTGTCTTTCATCCTGGAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATTAAAATAAATGGACTCTGTGTGTCTTTCATCCTGGAATATA  850

seq1  AATGGTTAAAGGTAGGAAGGAACCTTGCACCCAGGATTTTTAAAGTTTTT  900
      |||||||||||||||| ||||||||||||||||||||||| ||  |||||
seq2  AATGGTTAAAGGTAGG-AGGAACCTTGCACCCAGGATTTTAAAGTTTTTT  899

seq1  TTTTTTACAACATTAACAAACCTTTTCCAGCCTCACAAGTCCCCCCAGTG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTTACAACATTAACAAACCTTTTCCAGCCTCA-AAGTCCCCCCAGTG  948

seq1  TTGTTCTTACTCAATTTTGACCCTTAATTGTCATATGAATTTTATAAGTA  1000
      ||| |||||||||| ||||||||||||||||||||||||  |||||||||
seq2  TTG-TCTTACTCAA-TTTGACCCTTAATTGTCATATGAA--TTATAAGTA  994

seq1  CAGCAGTGTCAATAAATGAATGATACAAGTTTACAAGTGAGCCT-GTCAA  1049
      ||||||||||||| ||||||||||||||||| || ||||||||| |||||
seq2  CAGCAGTGTCAAT-AATGAATGATACAAGTTAAC-AGTGAGCCTGGTCAA  1042

seq1  TCACA--GTTGAGCCACCATGCATATTTGTTT-CTTACTTCAAATCTTAC  1096
      |||||   |||||||| ||||||||||||||| ||||| ||||||| |||
seq2  TCACAAGTTTGAGCCA-CATGCATATTTGTTTCCTTACCTCAAATCCTAC  1091

seq1  -TACATCTTTTTACCTTTCCATGTTTTATTTCTCTCACTTTTTCTTTCAA  1145
       ||||||||||  ||||  |||  ||||||||||||||||||   |||| 
seq2  TTACATCTTTTACCCTT--CATAGTTTATTTCTCTCACTTTT--CTTCAT  1137

seq1  TACTATGCTGGGTAGGGGTGGTAAGGG  1172
         ||||||||| ||||||||||||||
seq2  CCATATGCTGGG-AGGGGTGGTAAGGG  1163