BAC Information

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BAC

Clone NameB6Ng01-001P14
Chromosome8 (Build37)
Map Location 79,264,386 - 79,391,558
singlet/doubletdoublet
Overlap geneLOC100039211, LOC384847
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226
Downstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P14.bB6Ng01-001P14.g
ACCDH840135DH840136
length9591,023
definitionDH840135|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P14, 5' end.DH840136|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,264,386 - 79,265,336)(79,390,544 - 79,391,558)
sequence
gaattcacaaagactagggcaacatgcacacagcctgtacaggttcaaac
cagagaggtcccagcgataaaaagaacatggacacaggatcccacctgtg
gggagaaaagctatttgctatagcattgttgtttatatataaatctcaga
ttcgggttactgctccctgtcccaatggtttatattccagagtgaaagac
acacacacagcctttatattttgatatgccttacacagtgcaatagctag
gcaacttcctaacccccatgcagctaatccacctccctgcaatgatccct
agtcattacttactaaattctatattctaccttgcctgccctggacccag
agggctgcccaaccgggctatattctccaggctccttcacatgctggcta
tgccatcctgtcctcaactctcctcaggcacagtgtctctccactcctca
tctttctcctgatatggtagatctccttcctcccccttcctctctgtccc
aaacccaggaatcctaaaaatcctacctctgtctgccctgcccagccatt
ggctatatttttaccaatcagcaactgtatttaccaatcagtaccaattg
gggggcagggtccctcaatgtctttcatgcagacacttgtgtaagcagtt
tgggggaccaaaattaacattataatataagcagcattagtccaaatcct
ctacagtttgcaaatgcctttagcaaagcaaaaatcagttttctccaatg
gcatgtcagtgggtgtatcaacgacactcaaggtacagcccatgtccaga
agaagttaaaacaaaacaaagaaaacctccagtaaggttttgttgtttgt
tttaattttcatttttgagggcttgttttgaaacacacacagatggaggg
agagagagggagggagagagaggaggaactaagaggggagaccctgactg
atagacaga
gaattctcttcccaggtcagtatatgctgtgtgaagttgataactaaaac
taactcagaataatattctggcaactagaaatttaaataaagctcttaag
atttgaagttagactatatatatatatatatatatatatatatatatata
tatatatatatataaataaataatttataaataaattataatttataaat
aaatatatgtacacacacacacacacatatatatatatgaatctttcaca
ggctaggtatggttgcacaggcctttcaccttggcacttgaaaggctgag
caaaaacaaaaccaacaacaacaaacaagtttctattgaacccaaagtat
gatttgaagtaattagtttctctgagagattattttgtgtttatattact
taccatgacaaagccctcatttcctcttccttcaaattgtccccaatctc
tttctactctctatttgtaaaattttgtttttctgttttgagacactctc
cctgcctccctctgtagctcaggatgccctcaacttgttcaaactaggta
ttggcagacatactttcagagagcttttggtttcctaagttaaagttcca
atattaaaaaaacacaagaaagtgctgagctgagttttagtttcaaataa
gtatactttagaaagttctgttgctgatgatgggactttcccacctagaa
gtcataaagtcaaagtttatgaaaaatgtaagtactatatgtatttgaaa
agtattactttgaaatcagttcctggctttttacttaaaatatattgtat
ttaagtagataaaaaagtaaactgtctattagaagttgaattatagatac
cctcctttcataaattatacatcttaagtctgaatttttgttttctgttt
gatttctgttgttctttgtatctaatatgacatatctgatatgggggaac
tactttcaagtaaagtaaatggtaactaaacttctagcctatgtaggtgg
accctaagcttatggttctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79264386_79265336
seq2: B6Ng01-001P14.b_45_1003

seq1  GAATTCACAAAGACTAGGGCAACATGCACACAGCCTGTACAGGTTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGACTAGGGCAACATGCACACAGCCTGTACAGGTTCAAAC  50

seq1  CAGAGAGGTCCCAGCGATAAAAAGAACATGGACACAGGATCCCACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTCCCAGCGATAAAAAGAACATGGACACAGGATCCCACCTGTG  100

seq1  GGGAGAAAAGCTATTTGCTATAGCATTGTTGTTTATATATAAATCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAAGCTATTTGCTATAGCATTGTTGTTTATATATAAATCTCAGA  150

seq1  TTCGGGTTACTGCTCCCTGTCCCAATGGTTTATATTCCAGAGTGAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGTTACTGCTCCCTGTCCCAATGGTTTATATTCCAGAGTGAAAGAC  200

seq1  ACACACACAGCCTTTATATTTTGATATGCCTTACACAGTGCAATAGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGCCTTTATATTTTGATATGCCTTACACAGTGCAATAGCTAG  250

seq1  GCAACTTCCTAACCCCCATGCAGCTAATCCACCTCCCTGCAATGATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCCTAACCCCCATGCAGCTAATCCACCTCCCTGCAATGATCCCT  300

seq1  AGTCATTACTTACTAAATTCTATATTCTACCTTGCCTGCCCTGGACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTACTTACTAAATTCTATATTCTACCTTGCCTGCCCTGGACCCAG  350

seq1  AGGGCTGCCCAACCGGGCTATATTCTCCAGGCTCCTTCACATGCTGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCCCAACCGGGCTATATTCTCCAGGCTCCTTCACATGCTGGCTA  400

seq1  TGCCATCCTGTCCTCAACTCTCCTCAGGCACAGTGTCTCTCCACTCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTGTCCTCAACTCTCCTCAGGCACAGTGTCTCTCCACTCCTCA  450

seq1  TCTTTCTCCTGATATGGTAGATCTCCTTCCTCCCCCTTCCTCTCTGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTGATATGGTAGATCTCCTTCCTCCCCCTTCCTCTCTGTCCC  500

seq1  AAACCCAGGAATCCTAAAAATCCTACCTCTGTCTGCCCTGCCCAGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGAATCCTAAAAATCCTACCTCTGTCTGCCCTGCCCAGCCATT  550

seq1  GGCTATATTTTTACCAATCAGCAACTGTATTTACCAATCAGTACCAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATTTTTACCAATCAGCAACTGTATTTACCAATCAGTACCAATTG  600

seq1  GGGGGCAGGGTCCCTCAATGTCTTTCATGCAGACACTTGTGTAAGCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGGGTCCCTCAATGTCTTTCATGCAGACACTTGTGTAAGCAGTT  650

seq1  TGGGGGACCAAAATTAACATTATAATATAAGCAGCATTAGTCCAAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACCAAAATTAACATTATAATATAAGCAGCATTAGTCCAAATCCT  700

seq1  CTACAGTTTGCAAATGCCTTTAGCAAAGCAAAAATCAGTTTTCTCCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTTGCAAATGCCTTTAGCAAAGCAAAAATCAGTTTTCTCCAATG  750

seq1  GCATGTCAGTGGGTGTATCAACGACACTCAAGGTACAGCCCATGTCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCAGTGGGTGTATCAACGACACTCAAGGTACAGCCCATGTCCAGA  800

seq1  AGAAGTTAAAACAAAACAAAGAAAACCTCCAGTAAGGTTTTGTTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAAAACAAAACAAAGAAAACCTCCAGTAAGGTTTTGTTGTTTGT  850

seq1  TTTAATTTTCATTTTTGAGGGCTTGTTTTGAAACACACACAGATGGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCATTTTTGAGGGCTTGTTTTGAAACACACACAGATGGAGGG  900

seq1  AGAGAGAGGGAGGGAGAGAGAGGAGGAACAAAGAGGGGAGACACAGACAG  950
      ||||||||||||||||||||||||||||| |||||||||||| | ||| |
seq2  AGAGAGAGGGAGGGAGAGAGAGGAGGAACTAAGAGGGGAGACCCTGACTG  950

seq1  A--------  951
      |        
seq2  ATAGACAGA  959

seq1: chr8_79390544_79391558
seq2: B6Ng01-001P14.g_67_1089 (reverse)

seq1  AAAGAGAGCAATAAGCTTAGTGTCCA-CTACATA-GCTAG-AGTTTAGTT  47
      ||||||| | |||||||||| ||||| ||||||| ||||| |||||||||
seq2  AAAGAGAACCATAAGCTTAGGGTCCACCTACATAGGCTAGAAGTTTAGTT  50

seq1  A-CATTTACTTTACTTGAAAGTAGTTCCACCATATCAGATATGTCATATT  96
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCATTTACTTTACTTGAAAGTAGTTCCCCCATATCAGATATGTCATATT  100

seq1  AGATAACAAAGAACAACAGAAATCAAACAGAAAAC-AAAATTCAGACCTA  145
      |||| |||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AGAT-ACAAAGAACAACAGAAATCAAACAGAAAACAAAAATTCAGACTTA  149

seq1  AGATGTATAATTTATGAAAGGA-GGTATCTATAATTCAACTTCTAATAGA  194
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATGTATAATTTATGAAAGGAGGGTATCTATAATTCAACTTCTAATAGA  199

seq1  CAGTTTAC-TTTTTATCTACTTAAATACAATATATTTTAAGTAAAAAGCC  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACTTTTTTATCTACTTAAATACAATATATTTTAAGTAAAAAGCC  249

seq1  AGGAACTGATTTCAAAGTAATACTTTTCAAATACATATAGTACTTACA-T  292
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGAACTGATTTCAAAGTAATACTTTTCAAATACATATAGTACTTACATT  299

seq1  TTTCATAAACTTTGACTTTATGACTTCTAGGTGGGAAAGTCCCATCATCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAACTTTGACTTTATGACTTCTAGGTGGGAAAGTCCCATCATCA  349

seq1  GCAACAGAACTTTCT-AAGTATACTTATTTGAAACTAAAACTCAGCTCAG  391
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAACAGAACTTTCTAAAGTATACTTATTTGAAACTAAAACTCAGCTCAG  399

seq1  CACTTTCTTGTGTTTTTTTAATATTGGAACTTTAACTTAGGAAACCAAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTGTGTTTTTTTAATATTGGAACTTTAACTTAGGAAACCAAAA  449

seq1  GCTCTCTGAAAGTATGTCTGCCAATACCTAGTTTGAACAAGTTGAGGGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAAAGTATGTCTGCCAATACCTAGTTTGAACAAGTTGAGGGCA  499

seq1  TCCTGAGCTACAGAGGGAGGCAGGGAGAGTGTCTCAAAACAGAAAAACAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCTACAGAGGGAGGCAGGGAGAGTGTCTCAAAACAGAAAAACAA  549

seq1  AATTTTACAAATAGAGAGTAGAAAGAGATTGGGGACAATTTGAAGGAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAAATAGAGAGTAGAAAGAGATTGGGGACAATTTGAAGGAAGA  599

seq1  GGAAATGAGGGCTTTGTCATGGTAAGTAATATAAACACAAAATAATCTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGGGCTTTGTCATGGTAAGTAATATAAACACAAAATAATCTCT  649

seq1  CAGAGAAACTAATTACTTCAAATCATACTTTGGGTTCAATAGAAACTTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACTAATTACTTCAAATCATACTTTGGGTTCAATAGAAACTTGT  699

seq1  TTGTTGTTGTTGGTTTTGTTTTTGCTCAGCCTTTCAAGTGCCAAGGTGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGGTTTTGTTTTTGCTCAGCCTTTCAAGTGCCAAGGTGAA  749

seq1  AGGCCTGTGCAACCATACCTAGCCTGTGAAAGATTCATATATATATATGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTGCAACCATACCTAGCCTGTGAAAGATTCATATATATATATGT  799

seq1  GTGTGTGTGTGTGTACATATATTTATTTATAAATTATAATTTATTTATAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTACATATATTTATTTATAAATTATAATTTATTTATAA  849

seq1  ATTATTTATTTATATATATATATATATATATATATATATATATATATATA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTTATATATATATATATATATATATATATATATATATATATA  899

seq1  TATATATATAGTCTAACTTCAAATCTTAAGAGCTTTATTTAAATTTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAGTCTAACTTCAAATCTTAAGAGCTTTATTTAAATTTCTAG  949

seq1  TTGCCAGAATATTATTCTGAGTTAGTTTTAGTTATCAACTTCACACAGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAATATTATTCTGAGTTAGTTTTAGTTATCAACTTCACACAGCA  999

seq1  TATACTGACCTGGGAAGAGAATTC  1015
      ||||||||||||||||||||||||
seq2  TATACTGACCTGGGAAGAGAATTC  1023