BAC Information

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BAC

Clone NameB6Ng01-002B19
Chromosome8 (Build37)
Map Location 77,618,381 - 77,619,102
singlet/doubletsinglet
Overlap geneHmox1
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134
Downstream geneMcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B19.b
ACCDH840236
length761
definitionDH840236|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B19, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccgttattgctttggccgtaactaagacatctgtctgcttct
gcctccatccgctgacatgacatgttatgaccattccacttttgctttct
cttttcttatttctgatgctccatgtttgcttacctttgaaaaggatgat
ttttttacaattctgggctgctgatctttatttccctggacagacagaaa
ggggcataaattaccaaactctggtcctctttctctctgaccttgtgtcg
gttttctggaagtaaatgcaaaacagaccttcagaattcttacctaagcc
attgaattcttcctacacactcccacccacccaccctctcttacactttt
tctttcacaagcctgagagggggaaggggagacagacagacaaacgaccc
attcaccctggaaagggtggaggacgggggaggagtcatttctcagacca
ccatgtgggttccaagaaagattggcttatcaggcatggtggcaagtgct
tttcctggctgaacctccttccagtgtttaatcctcatccctgactttag
cactaaggattgaatttagtacttcagacattctaggcaagcactgtacc
actaaggtacagtatcggcacctttttgattttaaagatcgtgccggact
ggtctgaaactctccaatcctcctgctggattacagaaactattttaatg
cagatacttttgagtatagagcgtgtgttgtgtgtgtgtgaaaagttgga
tttggtgggtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_77618381_77619102
seq2: B6Ng01-002B19.b_79_803

seq1  ATCTGTCTGCTTCTGCCTCCCTAGTGCTGACATTAGAGGCATGT----GC  46
      |||||||||||||||||||| |   ||||||||    | |||||     |
seq2  ATCTGTCTGCTTCTGCCTCCAT-CCGCTGACAT----GACATGTTATGAC  45

seq1  CATTCCAC-CCAGCTCTTTTTTTTTTTTTTTTTAATAAACCCAATCATAC  95
      ||||||||    ||| | | |||| || ||| | ||    |||    | |
seq2  CATTCCACTTTTGCTTTCTCTTTTCTTATTTCTGAT-GCTCCATGTTTGC  94

seq1  TT--TTTTTAAAAAAAAGTTTTTTTTTAAAATAT----TTATG-TATTTA  138
      ||   ||| ||||  | | |||||||  || | |    |  || | ||||
seq2  TTACCTTTGAAAAGGATGATTTTTTTACAATTCTGGGCTGCTGATCTTTA  144

seq1  TTT--ATTTATTTATTTAATG-----TATATGAGTACACTATAGCTGTCA  181
      |||   |  |   |   || |     || || |  | ||| |    ||| 
seq2  TTTCCCTGGACAGACAGAAAGGGGCATAAATTACCAAACTCT---GGTCC  191

seq1  TCAGACACAGCAGATGAAGGTGTCAGAACCCACCATGT----GGTTGCTG  227
      ||   |              | || |     ||| |||    | || |||
seq2  TCTTTC--------------TCTCTG-----ACCTTGTGTCGGTTTTCTG  222

seq1  G----GAATTGAACACAGGACCTTTAGAAGAGCAGTCAGTGCTCTTGACC  273
      |     |||  || ||| |||||| ||||       |   ||  ||||  
seq2  GAAGTAAATGCAAAACA-GACCTTCAGAATTCTTACCTAAGCCATTGAAT  271

seq1  GCTGAGCCAC-CTCTCCAGCCCACCAACCTTATTTTTATATTTTTATTTA  322
       ||   | || | ||||  |||||| ||| | | ||    ||||| ||| 
seq2  TCT-TCCTACACACTCCCACCCACCCACCCTCTCTTACACTTTTTCTTTC  320

seq1  AAGTGTCTCATTACATTTTATTTATTGTGCATGTAGAGTGACA-------  365
      |   | || |  |      |      | | |   |||  ||||       
seq2  ACAAGCCTGA-GAGGGGGAA------GGGGAGACAGACAGACAAACGACC  363

seq1  CATTAAACATGTGAAGGTCAGAGGACTTGAAAGGAGTCATTTCTCAGACC  415
      |||| | | ||  ||||   ||||||  |  |||||||||||||||||||
seq2  CATTCACCCTGGAAAGGGTGGAGGACGGGGGAGGAGTCATTTCTCAGACC  413

seq1  ACCATGTGGGTTCCAAGAAAGATTGGCTTATCAGGCATGGTGGCAAGTGC  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGGTTCCAAGAAAGATTGGCTTATCAGGCATGGTGGCAAGTGC  463

seq1  TTTTCCTGGCTGAGCCTCCTTCCAGTGTTTAATCCTCATCCCTGACTTTA  515
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGCTGAACCTCCTTCCAGTGTTTAATCCTCATCCCTGACTTTA  513

seq1  GCAGTAAGGATTGAATTTAGTACTTCAGACATTCTAGGCAAGCACTGTAC  565
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGGATTGAATTTAGTACTTCAGACATTCTAGGCAAGCACTGTAC  563

seq1  CACTAAGGTACAGTATCGGCACCTTTTTGA-TTTAAAGATCGTGCCGGAC  614
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTAAGGTACAGTATCGGCACCTTTTTGATTTTAAAGATCGTGCCGGAC  613

seq1  TGGTCTGAAACTCTCCAATCCTCCTGCTGGATTACAGAAACTA-TTTAAT  663
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTCTGAAACTCTCCAATCCTCCTGCTGGATTACAGAAACTATTTTAAT  663

seq1  GCAGATAC-TTTGAGTATAGAGCGTGTG-TGTGTGTGTGTG-AAAGTTGG  710
      |||||||| ||||||||||||||||||| |||||||||||| ||||||||
seq2  GCAGATACTTTTGAGTATAGAGCGTGTGTTGTGTGTGTGTGAAAAGTTGG  713

seq1  ATTTGGTGGGTT  722
      ||||||||||||
seq2  ATTTGGTGGGTT  725