BAC Information

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BAC

Clone NameB6Ng01-002J13
Chromosome8 (Build37)
Map Location 103,922,330 - 104,066,550
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002J13.bB6Ng01-002J13.g
ACCDH840572DH840573
length1,065794
definitionDH840572|Mus musculus domesticus DNA, BAC clone: B6Ng01-002J13, 5' end.DH840573|Mus musculus domesticus DNA, BAC clone: B6Ng01-002J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,065,486 - 104,066,550)(103,922,330 - 103,923,116)
sequence
gaattcctatgagcatcagatataaagcaagcctgtataccactactgtt
cacatgttcctccactgaatttgtcaagtcaatttgaatctgagtaaaca
tggtagaacttagagagaaacccccaaggaaaggcatgaaaaaactccaa
gctgcggagagtatgagacagacacctgaatgttaagtcacttaaatgtc
tgggaaatctcaaatctttttaaagaaatgtagttcttttccaagaattc
cacagtgccttctcaaagtgtaaggtcagaagtatacatgtagatacagg
aaaagaaaatctagggtcatgccaaaaagaagcatgtcaaaatattgaca
tttgggttgcaaagtacagatttcttcatacagcacccttgtagatgtga
taaacagaaaaaagccctggaactttgctacagcttatagacaatgccct
gctcaatgcagaacacagaaactgtcttcaaaattatttcatccagcaat
gaactgaatcttgctcaacctaccacaaactcaaactttcattgcaaaag
tcccataaattaagttagcttccacaatagaagtcacaaaaggaaaaaaa
aaagcctatacctaatgtagtgtattataaatattttaattcctacttct
attctacacatactttctcctctgataataaagtgcatcattttacaaat
gcatcacataatgtgtcggacaaatatagataaacttccctcatatgtaa
agacatgataataaagagatgtcagattttcaccactggaaattcccccc
cccacccgggaaataaatcatccatgagatattgggtaccatgcatgatc
agagaggaacattttagatagagttaaaaaataaaaaaaaaaaaggagtt
attaaaagtgaagacctgagataccagaagtgagaatgcttttgagtgat
gggcttcatttgaccagagctgagggaggggcactgcattgtttgtctac
tctactgttacagcgttacaacttagcagcttttatcaaggcatttatta
tttcaggtcccttgt
gaattcacaggaggaggaagatgaagaaaagctgagcagaagcacatggc
ctggagaaactgcaggttctaaggattctcatagatgtggaagatggtag
tgtaacagtacatctgcccaatctaggctcataaaatgtaatcacattaa
ctgtgttgtgttttcatttgctgggacttatatgtgaagagacataccac
ttacagcaacaacactgtttctcacttaatctgagattctccgacttaga
agactgacttgcccacaagtacagggaatctgcccctccccagggttagg
attggaggtgtgtgtgtgtgtttccaaggtctgacatttgacattggcgc
tgatgatcaacctcaggtccatatgcctattcaacaggcacctatcctgc
agatacattttccatctccagaaaaaaaaataatattgaaacttccaaaa
ctagactaagtcctgaatcctgatttaagcctgtataaacatatcgataa
tatgtgataaatcgcattacaatttttgttgtgtgtatgtctatgtaaaa
gttttaaatattcaactagggcttgtgaagccatcattttttcataggac
catggttaaattcttaacactgacctgataactcacgactacatggagtc
caagttctgggaaatttgacatcatttctaccatagattccatgtgccct
catagcattgaaacaatatatttggaatagctacttgacaggattttact
aagtgtctgtgaagatgacagtttctcattgatcaatttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104065486_104066550
seq2: B6Ng01-002J13.b_43_1107 (reverse)

seq1  ACAAGGGACCTTGAAATAATAAATGCCTTGTTTAAAGCTGCTAATTTTGT  50
      |||||||||| ||||||||||||||||||| | |||||||||||  ||||
seq2  ACAAGGGACC-TGAAATAATAAATGCCTTGATAAAAGCTGCTAA-GTTGT  48

seq1  AATG-TGTTACAGTAGAGTAGACAAACAATCCAGTGCCCCTCCCTCAGCT  99
      || | ||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AACGCTGTAACAGTAGAGTAGACAAACAATGCAGTGCCCCTCCCTCAGCT  98

seq1  CTGTTCAAATGATGCCCAATCACTCAAAAGCATTCTCACTTCTGGTGTCT  149
      ||| |||||||| |||| |||||||||||||||||||||||||||| |||
seq2  CTGGTCAAATGAAGCCC-ATCACTCAAAAGCATTCTCACTTCTGGTATCT  147

seq1  CATGTCTTCACTTTTAATGTACTCCTTTTTTTTTTT--TTTTTTAACTCT  197
      || |||||||||||||||  ||||||||||||||||  ||||||||||||
seq2  CAGGTCTTCACTTTTAAT-AACTCCTTTTTTTTTTTTATTTTTTAACTCT  196

seq1  ATCTAAAATGTTCCTCTCTGTTCATGCATGGTACCCAATATCTCATGGAT  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTAAAATGTTCCTCTCTGATCATGCATGGTACCCAATATCTCATGGAT  246

seq1  GATTTATTTCCC-ACTTGTACTGTGAAATTCCAGTGGTGAAAATCTGACA  296
      ||||||||||||   | |    | ||| ||||||||||||||||||||||
seq2  GATTTATTTCCCGGGTGGGGGGGGGAATTTCCAGTGGTGAAAATCTGACA  296

seq1  TCTCTCTATTATCATGTCTTTACATCTGAGGGAAGTTTATCTATATTTGT  346
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCTTTATTATCATGTCTTTACATATGAGGGAAGTTTATCTATATTTGT  346

seq1  CCGACACACTATGTGATGCATTTGTAAAATGATGCACTTTATTATCAGAG  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACATTATGTGATGCATTTGTAAAATGATGCACTTTATTATCAGAG  396

seq1  GAGAAAGTATGTGTAGAATAGAAGTAGGAATTAAAATATTTATAATACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTATGTGTAGAATAGAAGTAGGAATTAAAATATTTATAATACAC  446

seq1  TACATTAGGTATAGGCTTTTTTTTTTCCTTTTGTGACTTCTATTGTGGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGGTATAGGCTTTTTTTTTTCCTTTTGTGACTTCTATTGTGGAA  496

seq1  GCTAACTTAATTTATGGGACTTTTGCAATGAAAGTTTGAGTTTGTGGTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTAATTTATGGGACTTTTGCAATGAAAGTTTGAGTTTGTGGTAG  546

seq1  GTTGAGCAAGATTCAGTTCATTGCTGGATGAAATAATTTTGAAGACAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAAGATTCAGTTCATTGCTGGATGAAATAATTTTGAAGACAGTT  596

seq1  TCTGTGTTCTGCATTGAGCAGGGCATTGTCTATAAGCTGTAGCAAAGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCTGCATTGAGCAGGGCATTGTCTATAAGCTGTAGCAAAGTTC  646

seq1  CAGGGCTTTTTTCTGTTTATCACATCTACAAGGCTGCTGTATGAAGAAAT  696
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGGGCTTTTTTCTGTTTATCACATCTACAAGGGTGCTGTATGAAGAAAT  696

seq1  CTGTACTTTGCAACCCAAATGTCAATATTTTGACATGCTTCTTTTTGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTGCAACCCAAATGTCAATATTTTGACATGCTTCTTTTTGGCA  746

seq1  TGACCCTAGATTTTCTTTTCCTGTATCTACATGTATACTTCTGACCTTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTAGATTTTCTTTTCCTGTATCTACATGTATACTTCTGACCTTAC  796

seq1  ACTTTGAGAAGGCACTGTGGAATTCTTGGAAAAGAACTACATTTCTTTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAAGGCACTGTGGAATTCTTGGAAAAGAACTACATTTCTTTAA  846

seq1  AAAGATTTGAGATTTCCCAGACATTTAAGTGACTTAACATTCAGGTGTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTGAGATTTCCCAGACATTTAAGTGACTTAACATTCAGGTGTCT  896

seq1  GTCTCATACTCTCCGCAGCTTGGAGTTTTTTCATGCCTTTCCTTGGGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATACTCTCCGCAGCTTGGAGTTTTTTCATGCCTTTCCTTGGGGGT  946

seq1  TTCTCTCTAAGTTCTACCATGTTTACTCAGATTCAAATTGACTTGACAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTAAGTTCTACCATGTTTACTCAGATTCAAATTGACTTGACAAA  996

seq1  TTCAGTGGAGGAACATGTGAACAGTAGTGGTATACAGGCTTGCTTTATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGAGGAACATGTGAACAGTAGTGGTATACAGGCTTGCTTTATAT  1046

seq1  CTGATGCTCATAGGAATTC  1065
      |||||||||||||||||||
seq2  CTGATGCTCATAGGAATTC  1065

seq1: chr8_103922330_103923116
seq2: B6Ng01-002J13.g_69_862

seq1  GAATTCAGAGGAGGAGGAAGATGAAGAAAAGCTGAGCAGAAGCACATGGC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAGGAGGAAGATGAAGAAAAGCTGAGCAGAAGCACATGGC  50

seq1  CTGGAGAAACTGCAGGTTCTAAGGAGTCTCATAGATGTGGAAGATGGTAG  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGGAGAAACTGCAGGTTCTAAGGATTCTCATAGATGTGGAAGATGGTAG  100

seq1  TGTAACAGTAGATCTGCCCAATCTAGGCTCATAAAATGTAATCACATTAT  150
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TGTAACAGTACATCTGCCCAATCTAGGCTCATAAAATGTAATCACATTAA  150

seq1  CTGTGTTGTGTTTTCATTTGCTGGGACTTATATGTGAAGAGACATACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTGTTTTCATTTGCTGGGACTTATATGTGAAGAGACATACCAC  200

seq1  TTACAGCAACAACACTGTTTCTCACTTAATCTGAGATTCTCCGACTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAACAACACTGTTTCTCACTTAATCTGAGATTCTCCGACTTAGA  250

seq1  AGACTGACTTGCCCACAAGTACAGGGAATCTGCCCCTCCCCAGGGTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTTGCCCACAAGTACAGGGAATCTGCCCCTCCCCAGGGTTAGG  300

seq1  ATTGGAGGTGTGTGTGTGTGTTTCCAAGGTCTGACATTTGACATTGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGTGTGTGTGTGTGTTTCCAAGGTCTGACATTTGACATTGGCGC  350

seq1  TGAGGATCAACCTCAGGTCCATATGCTTATTCAGCAGGCACCTAGCCAGC  400
      ||| |||||||||||||||||||||| |||||| |||||||||| || ||
seq2  TGATGATCAACCTCAGGTCCATATGCCTATTCAACAGGCACCTATCCTGC  400

seq1  AGATACATTTTCCATCTCCAGAAAAAAAAATAATATTGAAACTTCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTTTCCATCTCCAGAAAAAAAAATAATATTGAAACTTCCAAAA  450

seq1  CAAGACTAAGTCCTGAATCCTGATTTAAGCCTGTATAAACATATCGATAA  500
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAAGTCCTGAATCCTGATTTAAGCCTGTATAAACATATCGATAA  500

seq1  TATGTGATAAATTGCATTACAATTTTTGTTGTGTGTATGTATATGTAAAA  550
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  TATGTGATAAATCGCATTACAATTTTTGTTGTGTGTATGTCTATGTAAAA  550

seq1  GTTTTAAATATTAAACAAGGGCTTGTGAAGCCATCATTTTTTCATAGGAC  600
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  GTTTTAAATATTCAACTAGGGCTTGTGAAGCCATCATTTTTTCATAGGAC  600

seq1  CATGGTTAAATTCTTAGCACTGACATGATAACTCACGACTACATGGAGTC  650
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  CATGGTTAAATTCTTAACACTGACCTGATAACTCACGACTACATGGAGTC  650

seq1  CAAGTTCTGGGAAATTTGACATCTTTTCTACCATAGATTCCATTTGCCAT  700
      ||||||||||||||||||||||| ||||||||||||||||||| |||| |
seq2  CAAGTTCTGGGAAATTTGACATCATTTCTACCATAGATTCCATGTGCCCT  700

seq1  -ATAGCATTGAAACAATATATTTGGAATATCTAGTTTTCATTATTTTACT  749
       |||||||||||||||||||||||||||| ||| ||  ||  ||||||||
seq2  CATAGCATTGAAACAATATATTTGGAATAGCTACTTGACAGGATTTTACT  750

seq1  AACTGTCTGTGAAGATGACAGTTTCTCATTG------TTCTTTT  787
      || ||||||||||||||||||||||||||||      |||||||
seq2  AAGTGTCTGTGAAGATGACAGTTTCTCATTGATCAATTTCTTTT  794