BAC Information

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BAC

Clone NameB6Ng01-003A09
Chromosome8 (Build37)10 (Build37)
Map Location 4,663,484 - 4,664,684112,346,611 - 112,346,758
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133
Downstream geneEG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003A09.bB6Ng01-003A09.g
ACCDH840868DH840869
length1,195981
definitionDH840868|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A09, 5' end.DH840869|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,663,484 - 4,664,684)(112,346,611 - 112,346,758)
sequence
gaattcctattcttggatctgtatactgattctatttcagtcttgcatgt
gtttgctttcgatggggtctcgcataactgaggctggccttggatttatt
atgcagctgaggatggcgtgaacttctgacctcctgattctaacttccaa
agatacagaaccagcataccaaatttttgcaattcaagagtttaaacttg
ttaggtaaacactcaactacagaactatgcattcagagcctcacaggtga
caggaaaatggagatacctaaaatgatggatttgattctttagtcttgga
gttggcagcagtcatcatcatcatgtgataaagtgaagtacaacatcagg
agaaaataagttctaaccagcaacaacagactactggtatccctcaacac
atgtggcaaaacatctaagtagcagcctaggcttggaactggacaggctg
tctattgtagtagctctgtaccaaaacttgacatatacattcagagtcaa
tgtactatgagagacattaactaaaagttttaacagtccttccatatccc
aaggagtgtgtgtgtgcactcgtgcgtgtgtgcacccacatccaaacatt
catgtattcagcagtgtgtaaattggtacaaaatcatatttttaaacaca
gttatattttatacaaaattacagagccactttaatgctttgagtatttg
ttatagtcaatttgtgtttacgtaagttttactattcatgtccttggata
aatagatcattgttgggactctacaaagttgtagactaatgaaatctagc
ctctttgaactgttggggcacacagcatcaaatgggagactggagcagca
aacacggcttttcaagaaatgcccatgtagcttctggccagctctctgct
ttcctctgtctgggcctgagttcccggtggcactcagccctcacactagg
ctccttgtttatttaagggccatccgtccatttcattacttacttgcctc
tgagagcattttcattgggatgtttgagatgccagaacttgtggcatgtc
taacacgggaaagctgcacgctcagtgagctatcgagagaaaggcttaca
cgtgtcttgcagcgcaagcctggaaagccaggcctatagaaggagtttca
agctctgatagaacagttgggtccagtattggatttctcagcctg
gaattcaaggccagcctggtctacaaaattgagttccaggacagccaggg
ctacacagagaaaccctgtctcaaaaacaaaaaaacaaacaaacaaacaa
aagacttgaagtcaatcatggggtacaagctgatggcctgtgttctgctt
aaaacagttttttagacaaccttctgcttgagacagctttctctaaagat
ctccagatagctctgctctcaaagactaaggcccagtgttttatttacat
atcaatttggtcatttactccaggttcccttttgattatcccacaaatca
gcattcctagaccccttgattcctagaaagatagcaagcacattttttaa
cattgcaaatgaattcagagttatgcctgcctttgtaaacataaacaata
aatttagttgggtgggatcttgccctgcgaacagctccctgccagctgta
tccttccttaatatctttctgacaagctgtctcctggtgtagctaccttt
gttcttttaggtccatggagcttctcttataattcatattgcatccttat
attttgcatagttgagaaattatataattttaaacccatgttttcagaat
tctttcccacagccttaagggctaccctgaaggtctcagcattttatcat
ttttgctaaggacataaacatactcctcatcccagactcaggctgcttct
acttatcatggagtcgttaaccttaacagggaacacatttccagataacc
tccgcagggagaatatttttggaaggaggaacataaagtaaaaaaaaaaa
taaacacacacacacaagcctcacacccagcaactgtcaacactggagaa
acatgcactcttggcctgttgcaggagcaggaaaccaagtcacactatct
ctaccacatggtcaagcaagacttagcagtacacagttcaaaaatacttg
ttcatttgttctttgcttgttttctagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4663484_4664684
seq2: B6Ng01-003A09.b_46_1240

seq1  GAATTCCTATTCTTGGATCTGTATACTGATTCTATTTCAGTCTTGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCTTGGATCTGTATACTGATTCTATTTCAGTCTTGCATGT  50

seq1  GTTTGCTTTCGATGGGGTCTCGCATAACTGAGGCTGGCCTTGGATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTCGATGGGGTCTCGCATAACTGAGGCTGGCCTTGGATTTATT  100

seq1  ATGCAGCTGAGGATGGCGTGAACTTCTGACCTCCTGATTCTAACTTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTGAGGATGGCGTGAACTTCTGACCTCCTGATTCTAACTTCCAA  150

seq1  AGATACAGAACCAGCATACCAAATTTTTGCAATTCAAGAGTTTAAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGAACCAGCATACCAAATTTTTGCAATTCAAGAGTTTAAACTTG  200

seq1  TTAGGTAAACACTCAACTACAGAACTATGCATTCAGAGCCTCACAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAACACTCAACTACAGAACTATGCATTCAGAGCCTCACAGGTGA  250

seq1  CAGGAAAATGGAGATACCTAAAATGATGGATTTGATTCTTTAGTCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATGGAGATACCTAAAATGATGGATTTGATTCTTTAGTCTTGGA  300

seq1  GTTGGCAGCAGTCATCATCATCATGTGATAAAGTGAAGTACAACATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGCAGTCATCATCATCATGTGATAAAGTGAAGTACAACATCAGG  350

seq1  AGAAAATAAGTTCTAACCAGCAACAACAGACTACTGGTATCCCTCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGTTCTAACCAGCAACAACAGACTACTGGTATCCCTCAACAC  400

seq1  ATGTGGCAAAACATCTAAGTAGCAGCCTAGGCTTGGAACTGGACAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAAAACATCTAAGTAGCAGCCTAGGCTTGGAACTGGACAGGCTG  450

seq1  TCTATTGTAGTAGCTCTGTACCAAAACTTGACATATACATTCAGAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTAGTAGCTCTGTACCAAAACTTGACATATACATTCAGAGTCAA  500

seq1  TGTACTATGAGAGACATTAACTAAAAGTTTTAACAGTCCTTCCATATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATGAGAGACATTAACTAAAAGTTTTAACAGTCCTTCCATATCCC  550

seq1  AAGGAGTGTGTGTGTGCACTCGTGCGTGTGTGCACCCACATCCAAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGTGTGTGTGCACTCGTGCGTGTGTGCACCCACATCCAAACATT  600

seq1  CATGTATTCAGCAGTGTGTAAATTGGTACAAAATCATATTTTTAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTCAGCAGTGTGTAAATTGGTACAAAATCATATTTTTAAACACA  650

seq1  GTTATATTTTATACAAAATTACAGAGCCACTTTAATGCTTTGAGTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTTATACAAAATTACAGAGCCACTTTAATGCTTTGAGTATTTG  700

seq1  TTATAGTCAATTTGTGTTTACGTAAGTTTTACTATTCATGTCCTTGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTCAATTTGTGTTTACGTAAGTTTTACTATTCATGTCCTTGGATA  750

seq1  AATAGATCATTGTTGGGACTCTACAAAGTTGTAGACTAATGAAATCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCATTGTTGGGACTCTACAAAGTTGTAGACTAATGAAATCTAGC  800

seq1  CTCTTTGAACTGTTGGGGCACACAGCATCAAATGGGAGACTGGAGCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAACTGTTGGGGCACACAGCATCAAATGGGAGACTGGAGCAGCA  850

seq1  AACACGGCTTTTCAAGAAATGCCCATGTAGC-TCTGGCCAGCTCTCTGCT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACACGGCTTTTCAAGAAATGCCCATGTAGCTTCTGGCCAGCTCTCTGCT  900

seq1  TTCCTCTGTCT-GGCCTGAGTT-CCGGTGGCACTCAG-CCTCACACTAGG  946
      ||||||||||| |||||||||| |||||||||||||| ||||||||||||
seq2  TTCCTCTGTCTGGGCCTGAGTTCCCGGTGGCACTCAGCCCTCACACTAGG  950

seq1  CTCCTGTTTTATTT-AGGGCCATCCGTCCATTTTCATTACTTACTTGGCC  995
      |||||  ||||||| ||||||||||||||| ||||||||||||||| |||
seq2  CTCCTTGTTTATTTAAGGGCCATCCGTCCA-TTTCATTACTTACTT-GCC  998

seq1  TCTGAGAGCATTTTCATTGGGATGTTTGAGATGCCAGAAC-TGTGGCATG  1044
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGAGAGCATTTTCATTGGGATGTTTGAGATGCCAGAACTTGTGGCATG  1048

seq1  TCTAACAC-GGAAAGCTGCACGCACAGTGGAGCCAATCGGAGAGAGAGGC  1093
      |||||||| |||||||||||||| |||| ||| | ||| |||||| ||||
seq2  TCTAACACGGGAAAGCTGCACGCTCAGT-GAG-CTATC-GAGAGAAAGGC  1095

seq1  -TACACGTG--CTGCAGGCCGCAGAGCTGGAGAGGCAGGGCTATAGATGA  1140
       ||||||||   |||||  ||||   ||||| || |||| ||||||| | 
seq2  TTACACGTGTCTTGCAG--CGCAAGCCTGGAAAGCCAGGCCTATAGAAGG  1143

seq1  GGTCTCCAGAGGCTCCAGATAGTAGACATGTTGGTGCAGGGATTGGTGAT  1190
       || ||   | ||| | ||||| | |   |||||  |  | ||||  |||
seq2  AGTTTC---AAGCT-CTGATAGAACA---GTTGGGTCCAGTATTG--GAT  1184

seq1  TTCTCAGCCTG  1201
      |||||||||||
seq2  TTCTCAGCCTG  1195

seq1: chr10_112346611_112346758
seq2: B6Ng01-003A09.g_77_578 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TAAAAGAACAAAGGTAGCTACACCAGGAGACAGCTTGTCAGAAAGATATT  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGGAAGGATACAGCTGGCAGGGAGCTGTTCGCAGGGCAAGATCCCACCC  100

seq1  --------------------------------------------------  0
                                                        
seq2  AACTAAATTTATTGTTTATGTTTACAAAGGCAGGCATAACTCTGAATTCA  150

seq1  --------------------------------------------------  0
                                                        
seq2  TTTGCAATGTTAAAAAATGTGCTTGCTATCTTTCTAGGAATCAAGGGGTC  200

seq1  --------------------------------------------------  0
                                                        
seq2  TAGGAATGCTGATTTGTGGGATAATCAAAAGGGAACCTGGAGTAAATGAC  250

seq1  --------------------------------------------------  0
                                                        
seq2  CAAATTGATATGTAAATAAAACACTGGGCCTTAGTCTTTGAGAGCAGAGC  300

seq1  --------------------------------------------------  0
                                                        
seq2  TATCTGGAGATCTTTAGAGAAAGCTGTCTCAAGCAGAAGGTTGTCTAAAA  350

seq1  --------TAAACAGAACAAAGG-TTTTTGTTTGT-----TTGTTTGTTT  36
              ||| ||||||| |||   |  | ||||      || |||  |
seq2  AACTGTTTTAAGCAGAACACAGGCCATCAGCTTGTACCCCATGATTGACT  400

seq1  TGTTGTTGGTGGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA  86
      |   |           | |||| ||| ||| ||| ||||||| |||||||
seq2  TCAAG-----------TCTTTTGTTTGTTTGTTTGTTTTTTTGTTTTTGA  439

seq1  GACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTC-ACTGTGTAG  135
      |||||||||||||||| ||||| ||||||||||||||||| | | |||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAATTTTGTAG  489

seq1  ACCAGGCTGGCCT  148
      |||||||||||||
seq2  ACCAGGCTGGCCT  502