BAC Information

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BAC

Clone NameB6Ng01-003K06
Chromosome8 (Build37)
Map Location 60,837,860 - 60,838,842
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K06.g
ACCDH841286
length977
definitionDH841286|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatggctgaatcttccttaggacatatctgtggagatattgagt
aaggattatgtttttatgattttctagagatttatttatttattttatgt
atatgagtacaccattgctttctccaggcacaccataagaggccatgtga
ccctattacagatggttgtgagtcaccctgcggttgctgggaattgaact
caagacttctggaagagtattggtgctcttaaccactgcttcctctctcc
agccatgaagatttttttaagacccaaattaatgcctgattttgaaaaaa
aaagactatggcagaaactgagtattttaaaaggttctcaaacattttac
attgcccttgattttgggtggagttaacacactaaaaaggattgtgtcac
ataaaacattttttcccctgaccaattacttcacagaaattttgaacatt
tttagggtatggactcaaagtggacaaatattcattccattctatgatgt
tttttcacaggaatgggaggctcttctgttttgcaaatgctatttcaaag
tcaagacactataatcaaaaggacctctatttgtgtaataaagtacctac
ttgtaatatatacggttagtgacataacatgtatctttatttaacttttc
cttggagtgaaagatgtttactcttatttgggtagatgcatctaacatga
ctctatgtctatctgtctatctctccctatctaactatctatctagctag
ctatctatctatctatctatctatctatctatcatctactctctatctat
ataggtctatgtagcttcaatgtaatctatatatctatatatctatctca
ttatatatatatatatgagcaggtacagtgcagttataaatacagatgat
agaatagtgaccacggttcatgagatggactctgctaacgcctttcagac
atgcttctgttttcccagtctgcctca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60837860_60838842
seq2: B6Ng01-003K06.g_66_1042

seq1  GAATTCAATGGCTGAGTCTTCCTTAGGACATATCTGTGGAGATATTGAGT  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCTGAATCTTCCTTAGGACATATCTGTGGAGATATTGAGT  50

seq1  AAAAATTATTTTTTTAAAATTTTCTAGAGATTTATTTATTTATTTTATGT  100
      ||  ||||| ||||||  ||||||||||||||||||||||||||||||||
seq2  AAGGATTATGTTTTTATGATTTTCTAGAGATTTATTTATTTATTTTATGT  100

seq1  ATATGAGTACACCATTGCTTTCTCCAGGCACACCATAAGAGGCCATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTACACCATTGCTTTCTCCAGGCACACCATAAGAGGCCATGTGA  150

seq1  CCCTATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACT  200
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  CCCTATTACAGATGGTTGTGAGTCACCCTGCGGTTGCTGGGAATTGAACT  200

seq1  CAAGACTTCTGGAAGAGCAATTGGTGCTCTTAACCACTGAGCAATCTCTC  250
      |||||||||||||||||  ||||||||||||||||||||     ||||||
seq2  CAAGACTTCTGGAAGAG-TATTGGTGCTCTTAACCACTGCTTCCTCTCTC  249

seq1  CAGCCATGAAGATTTTTTTAAGACACAAATTAATGCATGATTTTGAAAAA  300
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  CAGCCATGAAGATTTTTTTAAGACCCAAATTAATGCCTGATTTTGAAAAA  299

seq1  AAAAGACTATGGCAGAAACTGAGTATTTTAAAAGGTTCTCAGAGATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  AAAAGACTATGGCAGAAACTGAGTATTTTAAAAGGTTCTCAAACATTTTA  349

seq1  GATTGCCCTTGATTTTGGGTGGAGTTAACACACTAAAAAGGATTGTGTCA  400
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCCTTGATTTTGGGTGGAGTTAACACACTAAAAAGGATTGTGTCA  399

seq1  CAGAAAACATTTTTTCCCCTGACCAATTACTTCACAGAAATTTTGAACAT  450
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATTTTTTCCCCTGACCAATTACTTCACAGAAATTTTGAACAT  449

seq1  TTTTAGGGTATGGACTCAAAGTGGACAAATATTCATTCCATTCTATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGTATGGACTCAAAGTGGACAAATATTCATTCCATTCTATGATG  499

seq1  TTTTTTCACAGGAATGGGAGGCTCTTCTGTTTTGCAAATGCTATTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACAGGAATGGGAGGCTCTTCTGTTTTGCAAATGCTATTTCAAA  549

seq1  GTCAAGACACTATAATCAAAAGGACAGCTATTTGTGTAATAAAGTACCTT  600
      |||||||||||||||||||||||||  |||||||||||||||||||||| 
seq2  GTCAAGACACTATAATCAAAAGGACCTCTATTTGTGTAATAAAGTACCTA  599

seq1  CTTGTAATATATACGGTTAGTTACATAAAATGTATCTTTATTTAACTTTT  650
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  CTTGTAATATATACGGTTAGTGACATAACATGTATCTTTATTTAACTTTT  649

seq1  CTTTGGAGTGAAAGATGTTTACTCTTATTTGGGTTGATGCATCTAACATG  700
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTGGAGTGAAAGATGTTTACTCTTATTTGGGTAGATGCATCTAACATG  699

seq1  TCTCTATATCTATCTGTCTATCTCTCCCTATCTATCTATCTATCTATCTA  750
       |||||| |||||||||||||||||||||||||| ||||||||||| |||
seq2  ACTCTATGTCTATCTGTCTATCTCTCCCTATCTAACTATCTATCTAGCTA  749

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCATCTAGTCTCTATCTA  800
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTATCTATCTATCTATCTATCTATCTATCTATCATCTACTCTCTATCTA  799

seq1  TATGTATCTATGTATCTTCTATGTAATCTATATATCTATATATCTATCTC  850
      |||   |||||||| |||| ||||||||||||||||||||||||||||||
seq2  TATAGGTCTATGTAGCTTCAATGTAATCTATATATCTATATATCTATCTC  849

seq1  ATTATATATATATATATGAAACAGGTACAGTACAGTTATAAATACAGATG  900
      |||||||||||||||||| | |||||||||| ||||||||||||||||||
seq2  ATTATATATATATATATG-AGCAGGTACAGTGCAGTTATAAATACAGATG  898

seq1  ATGGAAATAGTGACCATGGGTCTATGATGATGAACTCTGCTAATGTCTTT  950
      || | ||||||||||| || || |||| |||| |||||||||| | ||||
seq2  ATAG-AATAGTGACCACGGTTC-ATGA-GATGGACTCTGCTAACGCCTTT  945

seq1  CTGGACTTGCTTCTGTTTTCCCAGTCTGCCTCA  983
      |  ||| ||||||||||||||||||||||||||
seq2  C-AGACATGCTTCTGTTTTCCCAGTCTGCCTCA  977