BAC Information

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BAC

Clone NameB6Ng01-004C21
Chromosome8 (Build37)
Map Location 19,952,888 - 20,015,291
singlet/doubletdoublet
Overlap geneLOC100040599, EG665822, 6820431F20Rik
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C21.bB6Ng01-004C21.g
ACCDH841663DH841664
length1,1471,061
definitionDH841663|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C21, 5' end.DH841664|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,952,888 - 19,954,036)(20,014,209 - 20,015,291)
sequence
gaattcagtacaagatttataacgctaattaaagtagtagactctgcgga
aagaaatgaactacttatatatccactatgaaagctccatctgaaatggg
gaagaaaaatgtcttgaactgccgaatcaccaaagttgctgggtacctgt
gctaggacagtttaagaacatctcccagtgaaaggtagttttctgctgac
ttggacatttcaagactcaaacatcatttggaaacactgcttggtacctg
tgattacatatggtataattctaaagaaatggcttatgctgtcatctttg
aggtcacaggttataagttttcagacttagggactgtgggtgtttgtcat
ggtagaacacttgccatagacacctatggctcttaattcagtgacaaaca
ctttcaaaagtaaaaatacaatggctgtggagcagcaaccgatctttgtt
accctttggcttggtggatggctcataaggtgaactcctgaactaggcag
tgatccctagtgcatgctgttctttgttgtggtgaaactgtctcttttcc
agctcccacttcatgtgtgctaagcttcctaactatgcctctgagtttct
tgcaatctctctatcattttaatactcctgacttaagcaattgtcaccct
caagagcagcactaagattgaagaaaggaagaaactgtacctttttgcac
actttgctgctaaaaattctaccatttcaggtttctgttcaaatgttgca
agttgcaatggtgtcaagccatactataaaggaaaaaaataatgcatttt
acaaaactacttgtttctcaacaatctgctcatcaccgattttgtgaaga
taagtagacaagaaaagagttacaagggatcattcatcctacaacacctg
ctgaactttcccacacacagctgtcttttcctttgacataccttttccct
gttcaacactgcctataaagggctccttccagaactctcccaaacactca
aggattgcatcttcttagcctccgtggaagtgggcctccattgccacagc
cagaaatacagagtacactgtgcttatgccctgttgaaggagtgtgtgct
cagaagggtctggcagagtttcccaacctgaatttcaaatatttctt
gaattctatgttagtgcgtcctaatgaagttctatatgagcaggcctact
agctgaccttagaccattaccaagggttgaaaactacaatccaggaatgg
ctgcctcagcactgacccacagacagacgcttgtatacagagaggcattt
aatgatatatttctgtccttttattttagaggagaattttgatcctaagg
aagaatactttgtctaagttgcaccgttatgtactaacagaacttatatt
atagcatactcatcttcccttatggtctagagatctttggcccaatggcc
tttggaaattcagagattaaaaaaaaatggcattttatacaattgcacta
atgatcttcacagtggcaatatttcacagttggccaaaaaaagaactgcc
aatttatttctttaagattaccataaatttctatatttgctgtttgggtg
atgaaagaaagttcccaggctagctcatgcacaggaggtacactgtcatc
ttataggtagggtgctgacaaacagcttagggcccatggtggcagcaaag
aagcatagtcacctaggtcttcagagaaatgagatcacgtgttctgccat
ttgcatggtttggggagagagagatgctatagtttgacttttgcttctaa
ctagtttggttgttgccttgatcttattgaaatctgaacaattggatatt
actttgtagctactctatgctttaggtgcctcctaacctgactttgcaag
gcctttcactagttacaaatattttctgtcgtttttcattgaagttcttg
gaaaatctggttcccatagccaatcatttgaatacaggtcgccctggccg
caatgatcaatggttaatttatggtttacttgtcagaacagcagaaaggt
ttcatcagccatacctcagagaagagtaggtagcattggagactatggac
agctgttgcttggagagtcacagataccacgtgttacaagttcatctgca
aactgatctgttgttgatgcttgttgtagtgtgtagatcccctcattcct
cgagactttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19952888_19954036
seq2: B6Ng01-004C21.b_47_1193

seq1  GAATTCAGTACAAGATTTATAACGCTAATTAAAGTAGTAGACTCTGCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACAAGATTTATAACGCTAATTAAAGTAGTAGACTCTGCGGA  50

seq1  AAGAAATGAACTACTTATATATCCACTATGAAAGCTCCATCTGAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAACTACTTATATATCCACTATGAAAGCTCCATCTGAAATGGG  100

seq1  GAAGAAAAATGTCTTGAACTGCCGAATCACCAAAGTTGCTGGGTACCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAATGTCTTGAACTGCCGAATCACCAAAGTTGCTGGGTACCTGT  150

seq1  GCTAGGACAGTTTAAGAACATCTCCCAGTGAAAGGTAGTTTTCTGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACAGTTTAAGAACATCTCCCAGTGAAAGGTAGTTTTCTGCTGAC  200

seq1  TTGGACATTTCAAGACTCAAACATCATTTGGAAACACTGCTTGGTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTTCAAGACTCAAACATCATTTGGAAACACTGCTTGGTACCTG  250

seq1  TGATTACGTATGGTATAATTCTAAAGAAATGGCTTATGCTGTCATCTTTG  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATATGGTATAATTCTAAAGAAATGGCTTATGCTGTCATCTTTG  300

seq1  AGGTCACAGGTTATAAGTTTTCAGACTTAGGGACTGTGGGTGTTTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTCACAGGTTATAAGTTTTCAGACTTAGGGACTGTGGGTGTTTGTCAT  350

seq1  GGTAGAACACTTGCCATAGACACCTATGGCTCTTAATTCAGTGACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAACACTTGCCATAGACACCTATGGCTCTTAATTCAGTGACAAACA  400

seq1  CTTTCAAAAGTAAAAATACAATGGCTGTGGAGCAGCAACCGATCTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAAGTAAAAATACAATGGCTGTGGAGCAGCAACCGATCTTTGTT  450

seq1  ATCCTTTGGCTTGGTGGATGGCTCATGAGGTGAACTCCTGAACTAGGCAG  500
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCCTTTGGCTTGGTGGATGGCTCATAAGGTGAACTCCTGAACTAGGCAG  500

seq1  TGATCCCTACTGCATGCTGTTCTTTGTTGTGGTGAAACTGTCTCTTTTCC  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTAGTGCATGCTGTTCTTTGTTGTGGTGAAACTGTCTCTTTTCC  550

seq1  AGCTCCCACTTCATGTGTGCTAAGCTTCCTAACTATGCCTCTGAGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCTCCCACTTCATGTGTGCTAAGCTTCCTAACTATGCCTCTGAGTTTCT  600

seq1  TACAATCTCTCTATCATTTTAATACTCCTGACTTAAGCAATTGTCACCCT  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCTCTCTATCATTTTAATACTCCTGACTTAAGCAATTGTCACCCT  650

seq1  CAAGAGCAGCACTAAGATTGAAGAAAGGAAGAAACTGTACCTTTTTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGCACTAAGATTGAAGAAAGGAAGAAACTGTACCTTTTTGCAC  700

seq1  ACTTTGCTGCTAAAAATTCTACCATTTCAGGTTTCTGTTCAAATGTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGCTAAAAATTCTACCATTTCAGGTTTCTGTTCAAATGTTGCA  750

seq1  AGTTGCAATGGTGTCAAGCCATACTATAAAGGAAAAAAATAATGCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAATGGTGTCAAGCCATACTATAAAGGAAAAAAATAATGCATTTT  800

seq1  ACAAAACTACTTGTTTCTCAACAATCTGCTCATCACCGATTTTGTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTACTTGTTTCTCAACAATCTGCTCATCACCGATTTTGTGAAGA  850

seq1  TAAGTAGAC-----AAGAGTCACAAGGGATCATTCATCCTACAACACCTG  895
      |||||||||     |||||| |||||||||||||||||||||||||||||
seq2  TAAGTAGACAAGAAAAGAGTTACAAGGGATCATTCATCCTACAACACCTG  900

seq1  CTGAACTTTCCCACACACAGCTGTCTTTTCCCTTTGACACACCTTTTCCC  945
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  CTGAACTTTCCCACACACAGCTGTCTTTT-CCTTTGACATACCTTTTCCC  949

seq1  TGTCCAACACTGCCTATAACAGGGCTCCCTTCCAGAACTCTCCCCAAACA  995
      ||| ||||||||||||||| |||||| |||||||||||||| ||||||||
seq2  TGTTCAACACTGCCTATAA-AGGGCT-CCTTCCAGAACTCT-CCCAAACA  996

seq1  CTCAAGGATTGCAATCTTCTTAG-CTCCGTGGAGTGGGGCCTCCATTGCC  1044
      |||||||||||| |||||||||| |||||||||   ||||||||||||||
seq2  CTCAAGGATTGC-ATCTTCTTAGCCTCCGTGGAAGTGGGCCTCCATTGCC  1045

seq1  ACAGCCCAGAATACAGAGTACACTGTGC-TATGCCCCTGTTGAAGGA--G  1091
      ||||||   ||||||||||||||||||| |||| |||||||||||||  |
seq2  ACAGCCAGAAATACAGAGTACACTGTGCTTATG-CCCTGTTGAAGGAGTG  1094

seq1  TGTGCTCAGGAGGGGTCTGGGGCAGAGTTTCTCAACCTGTATTTCAAATA  1141
      |||||||| || ||||||  ||||||||||| ||||||| |||||||  |
seq2  TGTGCTCA-GAAGGGTCT--GGCAGAGTTTCCCAACCTGAATTTCAA--A  1139

seq1  TATTTCTT  1149
      ||||||||
seq2  TATTTCTT  1147

seq1: chr8_20014209_20015291
seq2: B6Ng01-004C21.g_64_1124 (reverse)

seq1  TAAAAGTCTTCGAGGAATGAGTGGATCTAACAACACTACAAACAAAGCAT  50
      |||||||| |||||||||||| |||||||   |||||||||   ||||||
seq2  TAAAAGTC-TCGAGGAATGAGGGGATCTA--CACACTACAA--CAAGCAT  45

seq1  CCAACAACCAGAATCAGTTTGGCAGATGAACTTGTAACACCGTGGTTATT  100
       |||||| ||| |||||||| |||||||||||||||||| ||||| ||| 
seq2  -CAACAA-CAG-ATCAGTTT-GCAGATGAACTTGTAACA-CGTGG-TAT-  88

seq1  CTTGTGGCCTCTTCCAAGCAAACAAGCTTGTCCATAGTCTCCAATGCCTT  150
        ||| | ||| |||||||||   ||| |||||||||||||||||||  |
seq2  -CTGT-GACTC-TCCAAGCAA--CAGC-TGTCCATAGTCTCCAATGC--T  130

seq1  ACCTACTCCTTCTCTGAGGTATGGCTGATGAAACCTTTCCTGCTGTTCTG  200
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  ACCTACT-CTTCTCTGAGGTATGGCTGATGAAACCTTT-CTGCTGTTCTG  178

seq1  ACAAGTAAACCATAAACTAACCATTGATCATTGCGGCCAGGGCGACCTGT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAGTAAACCATAAATTAACCATTGATCATTGCGGCCAGGGCGACCTGT  228

seq1  ATTCAAATGATTGGCTATGGGAACCAGATTTTCCAAGAACTTCAATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGATTGGCTATGGGAACCAGATTTTCCAAGAACTTCAATGAAA  278

seq1  AACGACAGAAAATATTTGTAACTAGTGAAAGGCCTTGCAAAGTCAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACAGAAAATATTTGTAACTAGTGAAAGGCCTTGCAAAGTCAGGTTA  328

seq1  GGAGGCACCTAAAGCATAGAGTAGCTACAAAGTAATATCCAATTGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTAAAGCATAGAGTAGCTACAAAGTAATATCCAATTGTTCAG  378

seq1  ATTTCAATAAGATCAAGGCAACAACCAAACTAGTTAGAAGCAAAAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATAAGATCAAGGCAACAACCAAACTAGTTAGAAGCAAAAGTCAA  428

seq1  ACTATAGCATCTCTCTCTCCCCAAACCATGCAAATGGCAGAACACGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGCATCTCTCTCTCCCCAAACCATGCAAATGGCAGAACACGTGAT  478

seq1  CTCATTTCTCTGAAGACCTAGGTGACTATGCTTCTTTGCTGCCACCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTCTGAAGACCTAGGTGACTATGCTTCTTTGCTGCCACCATGG  528

seq1  GCCCTAAGCTGTTTGTCAGCACCCTACCTATAAGATGACAGTGTACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGCTGTTTGTCAGCACCCTACCTATAAGATGACAGTGTACCTCC  578

seq1  TGTGCATGAGCTAGCCTGGGAACTTTCTTTCATCACCCAAACAGCAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGAGCTAGCCTGGGAACTTTCTTTCATCACCCAAACAGCAAATA  628

seq1  TAGAAATTTATGGTAATCTTAAAGAAATAAATTGGCAGTTCTTTTTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTATGGTAATCTTAAAGAAATAAATTGGCAGTTCTTTTTTTGG  678

seq1  CCAACTGTGAAATATTGCCACTGTGAAGATCGTTAGTGCAATTGTATAAA  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAACTGTGAAATATTGCCACTGTGAAGATCATTAGTGCAATTGTATAAA  728

seq1  ATGCCATTTTTTTTTAATCTCTGAATTTCCAAAGGCCATTGGGCCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTTTTTTTAATCTCTGAATTTCCAAAGGCCATTGGGCCAAAGA  778

seq1  TCTCTAGACCATAAGGGAAGATGTGTATGCTATAATATAAGTTCTGTTAG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCTAGACCATAAGGGAAGATGAGTATGCTATAATATAAGTTCTGTTAG  828

seq1  TACATAACGGTGCAACTTAGACAAAGTATTCTTCCTTAGGATCAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAACGGTGCAACTTAGACAAAGTATTCTTCCTTAGGATCAAAATTC  878

seq1  TCCTCTAAAATAAAAGGACAGGAATATATCATTAAATGCCTCTCTGTATA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTCTAAAATAAAAGGACAGAAATATATCATTAAATGCCTCTCTGTATA  928

seq1  CAAGCGTCTGTCTGTGGGTCAGTGCTGAGGCAGCCATTCCTGGATTGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGTCTGTCTGTGGGTCAGTGCTGAGGCAGCCATTCCTGGATTGTAG  978

seq1  TTTTCAACCCTTGGTAATGGTCTAAGGTCAGCTAGTAGGCCTGCTCATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACCCTTGGTAATGGTCTAAGGTCAGCTAGTAGGCCTGCTCATAT  1028

seq1  AGAACTTCATTAGGACGCACTAACATAGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  AGAACTTCATTAGGACGCACTAACATAGAATTC  1061