BAC Information

Click to search

BAC

Clone NameB6Ng01-004C23
Chromosome8 (Build37)
Map Location 11,294,343 - 11,434,285
singlet/doubletdoublet
Overlap geneCol4a1, Col4a2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneRab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C23.bB6Ng01-004C23.g
ACCDH841667DH841668
length1,1451,133
definitionDH841667|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C23, 5' end.DH841668|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,433,124 - 11,434,285)(11,294,343 - 11,295,476)
sequence
gaattcaattccagggctggagagatggcacagcggttaagagcactgac
tgctcttccaaaggtcctgagttcaaatcccagcaattacatggtggctc
acaaccatctgtaatgagatctgacaccctcttctggagtgtctgaagac
agctacagtgtagttacatataataaatgaataaaaaaaaaaagaattca
actccaggggccaggcattcaataaaaacaccattccctgggatctaaac
ctgttttcaacaggttctgtctagaagtttacctgtgttgataaccctga
gggaatgccaccttcctaggtaaggtaagctgtcatcctagggccctgtg
gctccaggcctgccctgcaggtgtgggagctcagcttccagccaactgtg
ggggcccccggggacagactcagccccagcaagggaagcccttgcccggg
ttcacatttacctttctgcccagggataccaggcatccctgccattcctt
taaatccagggcttccagggtgaccacgctcgcctgacataccggcgtca
cctctgtccccagacagacctttcatgcccacagggccagggacaccagg
gtcaccaggctcgcccctgtctccaggcaaacctgtcagagagagagaga
agcaaaattaaacggcataggtacaacccttacggtgccttcgaggagct
acatttccttggaggaaaacagaaaactgtcccgacgaagatgatcagct
tacatttcagcctgtgagccctgcagggataggtttctaggaggtccctg
tgacaaagggctgactgtgagggacagtccagtgtggctctccctgggta
tggctccttgtttcctaaacagggatccatggagcacagcagaaaccgcc
ggctttgacccacccggtacggcgacgcaggttagcagagagctgatgct
tcgggccttgctctttcctgatctctgttcagtctccatcatggcagaca
aaagtgtcttccctgtagtagatctggagggatttagatccttcctgaag
aacatttgtctatgtctagcctcatgccccagctttgatctttcttaccc
tcttgcaatctcctcacccaacccctgccctctcttccatgagct
gaattctgaacatattcccacctagtgagcctggctcatttgacagcatt
cctgggtacttttgtggggttgcctttcataaccctagggctcgctctaa
tcaaatgtggaaagacaaggagtggaaagggcagctccttgtcacctaga
caatagtgccctgcagcatggatggtttctggctgacatcgttcactggg
ctgcagagaagatgagccctgcctggagaacctccagcccatggggcctt
atctaatggggttgagagttgttccccaactcctttttgaggggtggatt
tttttcgagacagggtttctctgtgtagccctggctgttctggaactcac
tctgtagaccagactggcctcaaagtcagaaatccacctgccactgcatc
ccaagggctgggattaaaagtgtgcaccaccactgcccggcttctttccc
aattcctacaacgacctttagggtagagcagagctctgtgagtttacagc
ctacacccaacccccttttcacaatccagggcattccccagccaatgaag
gagcatacagaagagagaacaaaggttgtgacctcccagactcctgagct
gtccctaaatgtccctcatgttgctgcaacctggtaaacccaccaaactc
tgcaatgtccccacctgctagccacatctgaaaaaaaaatggcacttagg
tctccatctagtcccctgggaggttggctcttagtgtcacaaagaaagta
aaatgggagcaaagacaacattctggatgtcagaaacccacaacccactg
catgcctctaaaatctgtaagcagagtctgtccctgcagctcccacacta
tccttgttggctttcagtgctggagcagaaatcccaaaggaataccatgt
tagggaagctgcagaggtctcgggtccttagatgtcattatgactcaatg
tggtcgtctttcagtcctcaaaagatagaaatccacgagaccctttcagc
ccattctcgtcatcggtttgtttagaaacatgaagtggcatgctatcatg
gagggcatgctaatcggtggagcatacatttccagaaacaattgggctag
aacttcgaaccacgctctatccaggggctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11433124_11434285
seq2: B6Ng01-004C23.b_48_1192 (reverse)

seq1  AGCTCATTTGAAAGAGAGGGGCAGTGGTGTGGGTGAGGAGATTGGCAGAG  50
      ||||||  || |||||| |||||| ||| |||||||||||||||  ||||
seq2  AGCTCA--TGGAAGAGA-GGGCAGGGGT-TGGGTGAGGAGATTGCAAGAG  46

seq1  GGT-AGAAAGAATACCAAGCTGGGGGCCATTGGAGGCTAGACATAGACAA  99
      ||| |||||||   | |||||||||  |||  ||||||||||||||||||
seq2  GGTAAGAAAGA--TCAAAGCTGGGG--CAT--GAGGCTAGACATAGACAA  90

seq1  ATG-TCTTCAGGGAGGGATCTAAAACCCTCCAGATCCTTACTACAGGGAA  148
      ||| |||||| ||| ||||||||| |||||||||||  ||||||||||||
seq2  ATGTTCTTCA-GGAAGGATCTAAATCCCTCCAGATC--TACTACAGGGAA  137

seq1  GGACACTTTTGTCTGCCATGATGGAGACTGAACAGAGAATCAGGAAAGAG  198
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -GACACTTTTGTCTGCCATGATGGAGACTGAACAGAG-ATCAGGAAAGAG  185

seq1  CAAGGCCCCGAAGCATCAGCCTCTCTGCTAACCCTGCGTCGCCGTACCGG  248
      ||||| ||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CAAGG-CCCGAAGCATCAG-CTCTCTGCTAA-CCTGCGTCGCCGTACCGG  232

seq1  GTGGGTCAAAGCCGGCGGTTTCCTGCTGTGCTCCATGGATCCCTGTTTAG  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGGTCAAAGCCGGCGGTTT-CTGCTGTGCTCCATGGATCCCTGTTTAG  281

seq1  GAAACAAGGAGCCATACCCAGGGAGAGCCACACTGGACTGTCCCTCACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGAGCCATACCCAGGGAGAGCCACACTGGACTGTCCCTCACAG  331

seq1  TCAGCCCTTTGTCACAGGGACCTCCTAGAAACCTATCCCTGCAGGGCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTTTGTCACAGGGACCTCCTAGAAACCTATCCCTGCAGGGCTCA  381

seq1  CAGGCTGAAATGTAAGCTGATCATCTTCGTCGGGACAGTTTTCTGTTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAATGTAAGCTGATCATCTTCGTCGGGACAGTTTTCTGTTTTC  431

seq1  CTCCAAGGAAATGTAGCTCCTCGAAGGCACCGTAAGGGTTGTACCTATGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGAAATGTAGCTCCTCGAAGGCACCGTAAGGGTTGTACCTATGC  481

seq1  CGTTTAATTTTGCTTCTCTCTCTCTCTGACAGGTTTGCCTGGAGACAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAATTTTGCTTCTCTCTCTCTCTGACAGGTTTGCCTGGAGACAGGG  531

seq1  GCGAGCCTGGTGACCCTGGTGTCCCTGGCCCTGTGGGCATGAAAGGTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCTGGTGACCCTGGTGTCCCTGGCCCTGTGGGCATGAAAGGTCTG  581

seq1  TCTGGGGACAGAGGTGACGCCGGTATGTCAGGCGAGCGTGGTCACCCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACAGAGGTGACGCCGGTATGTCAGGCGAGCGTGGTCACCCTGG  631

seq1  AAGCCCTGGATTTAAAGGAATGGCAGGGATGCCTGGTATCCCTGGGCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGGATTTAAAGGAATGGCAGGGATGCCTGGTATCCCTGGGCAGA  681

seq1  AAGGTAAATGTGAACCCGGGCAAGGGCTTCCCTTGCTGGGGCTGAGTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATGTGAACCCGGGCAAGGGCTTCCCTTGCTGGGGCTGAGTCTG  731

seq1  TCCCCGGGGGCCCCCACAGTTGGCTGGAAGCTGAGCTCCCACACCTGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGGGGCCCCCACAGTTGGCTGGAAGCTGAGCTCCCACACCTGCAG  781

seq1  GGCAGGCCTGGAGCCACAGGGCCCTAGGATGACAGCTTACCTTACCTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCTGGAGCCACAGGGCCCTAGGATGACAGCTTACCTTACCTAGG  831

seq1  AAGGTGGCATTCCCTCAGGGTTATCAACACAGGTAAACTTCTAGACAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCATTCCCTCAGGGTTATCAACACAGGTAAACTTCTAGACAGAA  881

seq1  CCTGTTGAAAACAGGTTTAGATCCCAGGGAATGGTGTTTTTATTGAATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAAAACAGGTTTAGATCCCAGGGAATGGTGTTTTTATTGAATGC  931

seq1  CTGGCCCCTGGAGTTGAATTCTTTTTTTTTTTATTCATTTATTATATGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCCTGGAGTTGAATTCTTTTTTTTTTTATTCATTTATTATATGTA  981

seq1  ACTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCA  1031

seq1  TTACAGATGGTTGTGAGCCACCATGTAATTGCTGGGATTTGAACTCAGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCACCATGTAATTGCTGGGATTTGAACTCAGGA  1081

seq1  CCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGTGCCATCTCTCCAGCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGTGCCATCTCTCCAGCC  1131

seq1  CTGGAATTGAATTC  1162
      ||||||||||||||
seq2  CTGGAATTGAATTC  1145

seq1: chr8_11294343_11295476
seq2: B6Ng01-004C23.g_67_1199

seq1  GAATTCTGAACATATTCCCACCTAGTGAGCCTGGCTCATTTGACAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACATATTCCCACCTAGTGAGCCTGGCTCATTTGACAGCATT  50

seq1  CCTGGGTACTTTTGTGGGGTTGCCTTTCATAACCCTAGGGCTCGCTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTACTTTTGTGGGGTTGCCTTTCATAACCCTAGGGCTCGCTCTAA  100

seq1  TCAAATGTGGAAAGACAAGGAGTGGAAAGGGCAGCTCCTTGTCACCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGGAAAGACAAGGAGTGGAAAGGGCAGCTCCTTGTCACCTAGA  150

seq1  CAATAGTGCCCTGCAGCATGGATGGTTTCTGGCTGACATCGTTCACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGCCCTGCAGCATGGATGGTTTCTGGCTGACATCGTTCACTGGG  200

seq1  CTGCAGAGAAGATGAGCCCTGCCTGGAGAACCTCCAGCCCATGGGGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAAGATGAGCCCTGCCTGGAGAACCTCCAGCCCATGGGGCCTT  250

seq1  ATCTAATGGGGTTGAGAGTTGTTCCCCAACTCCTTTTTGAGGGGTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGGGGTTGAGAGTTGTTCCCCAACTCCTTTTTGAGGGGTGGATT  300

seq1  TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCAC  350

seq1  TCTGTAGACCAGACTGGCCTCAAAGTCAGAAATCCACCTGCCACTGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGACTGGCCTCAAAGTCAGAAATCCACCTGCCACTGCATC  400

seq1  CCAAGGGCTGGGATTAAAAGTGTGCACCACCACTGCCCGGCTTCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCTGGGATTAAAAGTGTGCACCACCACTGCCCGGCTTCTTTCCC  450

seq1  AATTCCTACAACGACCTTTAGGGTAGAGCAGAGCTCTGTGAGTTTACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTACAACGACCTTTAGGGTAGAGCAGAGCTCTGTGAGTTTACAGC  500

seq1  CTACACCCAACCCCCTTTTCACAATCCAGGGCATTCCCCAGCCAATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCAACCCCCTTTTCACAATCCAGGGCATTCCCCAGCCAATGAAG  550

seq1  GAGCATACAGAAGAGAGAACAAAGGTTGTGACCTCCCAGACTCCTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACAGAAGAGAGAACAAAGGTTGTGACCTCCCAGACTCCTGAGCT  600

seq1  GTCCCTAAATGTCCCTCATGTTGCTGCAACCTGGTAAACCCACCAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAAATGTCCCTCATGTTGCTGCAACCTGGTAAACCCACCAAACTC  650

seq1  TGCAATGTCCCCACCTGCTAGCCACATCTGAAAAAAAAATGGCACTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTCCCCACCTGCTAGCCACATCTGAAAAAAAAATGGCACTTAGG  700

seq1  TCTCCATCTAGTCCCCTGGGAGGTTGGCTCTTAGTGTCACAAAGAAAGTT  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCCATCTAGTCCCCTGGGAGGTTGGCTCTTAGTGTCACAAAGAAAG-T  749

seq1  AAAATGGGAGCAAAGACAACATTCTGGATGTCAGAAACCCACAACCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAGCAAAGACAACATTCTGGATGTCAGAAACCCACAACCCACT  799

seq1  GCATGCCTCTAAAATCTGTAAGCAGAGTCTGTCCCTGCAGCTCCCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTCTAAAATCTGTAAGCAGAGTCTGTCCCTGCAGCTCCCACACT  849

seq1  ATCCTTGTTGGC-TTCAGTGCTGGAGCAGAAATCCCAAAGGAATACCATG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTTGGCTTTCAGTGCTGGAGCAGAAATCCCAAAGGAATACCATG  899

seq1  TTAGGGAAGCTGCAGAGGTCTC-GGTCCTTAGATGTCAATATGACTCAAT  948
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TTAGGGAAGCTGCAGAGGTCTCGGGTCCTTAGATGTCATTATGACTCAAT  949

seq1  GTGGTCGTCTTTCAGTCCTCAAAAGAATAGAAATCCACGAGACCC-TTCA  997
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  GTGGTCGTCTTTCAGTCCTCAAAAG-ATAGAAATCCACGAGACCCTTTCA  998

seq1  G-CCATTCTCGTCATCCGTTTTGTTTAAGAAACATGGAAGTGGCATGCTA  1046
      | ||||||||||||| || ||||||| |||||||| ||||||||||||||
seq2  GCCCATTCTCGTCAT-CGGTTTGTTT-AGAAACAT-GAAGTGGCATGCTA  1045

seq1  TCCATGAGGGCATGCT-ATCCGT-GAGCATACATTTCCCAGAAAACATGG  1094
      ||   ||||||||||| ||| || |||||||||||| |||||||  || |
seq2  TCATGGAGGGCATGCTAATCGGTGGAGCATACATTT-CCAGAAACAATTG  1094

seq1  GGCTAGAACTTTCGACCACG-TCTATCACAGGGGGCTCAAA  1134
      |||||||||||   |||||| |||||| || ||||||||||
seq2  GGCTAGAACTTCGAACCACGCTCTATC-CA-GGGGCTCAAA  1133