BAC Information

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BAC

Clone NameB6Ng01-004F23
Chromosome8 (Build37)
Map Location 11,337,362 - 11,443,588
singlet/doubletdoublet
Overlap geneCol4a2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
Downstream geneRab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F23.bB6Ng01-004F23.g
ACCDH841800DH841801
length1,1411,030
definitionDH841800|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F23, 5' end.DH841801|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,442,439 - 11,443,588)(11,337,362 - 11,338,396)
sequence
gaattcctggggaccccatagagccaggagcacctgcaagacaaagagaa
gctgtgatttcaggagcagagaaccatatctaagatgacgggcagcccgc
ctggctttcctctccactctttagagaatggggcacatcctagcctgagc
tgtcacccccaggcaccactcacctgggaatccttggtcgcctttgggtc
ctttggggcctctgtcacccacggccccagagggcccggtgttgcccatg
aatccttgttcacccttgggccctgcaatgaagacaggacagttaagacc
agggcaccatgttggttctgcagccctctgcccacagcaccggccccaca
ctgtacctttctcccccggaagaccgagtacaccaggctggccctggggc
cctgggtccccaacccatcctttctgtccagggaatcctgcagctccaga
gctcccctcatctcctttgattccaggaagtgcgtttggcccaggtggtc
ctggagggccttggtagcctgagggtaaaagtcacagtgtgggagggtta
ccatcctcagtggactctgtccctattaaacctcaaccctccacaccctc
ctggaccctcctccatctcctctcctgcatagttttcatattctctctct
gtctctgtttctctctgtgtgtccctgtctctgtttctctctctcccctg
taatttttgtatgtgagtgcaccattgctgtcttcagacacaccagcaga
gggcatcaggtcccatttcagatggttgtgagccaccatgtggttgctgg
gaattgaactcagcattctctcaggagtttaatgctcctgggaccttcta
tatgcagaagcacatgatgcttatccttggtagaaacttccatgaaacat
tctggcctcatccctgtcatagtgggtatgtcagaaactcgatcctaggc
tgactattgtgctgcaatgtgtgtaaactgccttttgcttgtctttttac
agtggtcacgtggctgcctgtgcttcttgacgtttaataatgtcttatag
caacttgatattagtattctagttggcagctttgttttattttcatccct
cttctgcattttctcaatactctctctctgtcttctgactc
gaattcatttttaaacaaaagctgggcccttactgaggaagctttacacg
tgttttatattctctaaacatgtgcatagttggctcagatactcagacac
acaaaaatctcccaccaacttgagtaaaggagtattcaactaagccattc
agagggcttgtccaccttaaagtgcacaaagagcaaaatgccttcggaaa
ccagtgacgagaagagagtgggtaaaataaaactgattccccaaagcatg
ctggggctgcgggagccactgagcccagaggttctgtcagcaccagacgg
gaaccggtgtgagtccagccagtcagcacatgctagaaactggcctctgg
cggagctgaaatgggcacctcagaggtcctgtgtgtgagactgagagtat
gcagtccctcctgcggctgaggaaggagtgtgtattggttccttttgtgc
cgccaaccacagcacctgaccgcaacagctcaaaggcagaaagatggatt
ttcagtccatctttctgtttcagtctctcggggtagggaagacgtggccc
agatcaggtcacagcacccaggggatgtgaggggatttactcgtagtgaa
caggatgcaaagcaggagaaaacccaggcacaggagaaaccttccaagac
ctgttcttagcgacctgctttccccaccaagggccctaaaggttttgaag
cctcccaaaatgctgccaccagatagggaccaagcagacaacacgtgagc
ctgcgagggacttctcatactcaagccacaacacctggcttccatgattt
gtgggcctcagttttgcaagggcacctgggttttctgtgccctgaagaca
tgagctcctctgtctccatcctattccgggcctccccggctccagctcct
ggctgctggcctcaagcacatgctgaacaagaggccagggtttgtttggg
gctttgttctggtcttgaaactacaggcagtttctagagagtgtgtgacc
catgaaagtagagtgtacactgagagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11442439_11443588
seq2: B6Ng01-004F23.b_46_1186 (reverse)

seq1  GAGTCAGAGAGACAGAGAGAGAGTA-TGAGAAATATGCAGGAGAGGAGAT  49
      |||||||| |||||||||||||||| ||||||| |||||| ||||| |||
seq2  GAGTCAGA-AGACAGAGAGAGAGTATTGAGAAA-ATGCAGAAGAGG-GAT  47

seq1  GAAATAAAGACAAAGCTGCCAACTAGGAATTACTTAAATATCAGGTTGCT  99
      ||||  || |||||||||||||||||  | ||||  ||||||| ||||||
seq2  GAAAATAAAACAAAGCTGCCAACTAG--AATACT--AATATCAAGTTGCT  93

seq1  AT-AGACATTATTTAAAACGTTCAAGAGGCACAGGCAGCCCACGTGACCA  148
      || ||||||||||  ||||| |||||| |||||||||| |||||||||||
seq2  ATAAGACATTATT--AAACG-TCAAGAAGCACAGGCAG-CCACGTGACCA  139

seq1  CTGGTAAAAGACAAGCAAAAGGCAGTTTACACACATTGCAGCACAATAGT  198
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAAGACAAGCAAAAGGCAGTTTACACACATTGCAGCACAATAGT  189

seq1  CAGCCTAGGATCGAGTTTCTGACATACCCACTATGACAGGGATGAGGCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGATCGAGTTTCTGACATACCCACTATGACAGGGATGAGGCCA  239

seq1  GAATGTTTCATGG-AGTTTCTACCAAGGATAAGCATCATGTGCTTCTGCA  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCATGGAAGTTTCTACCAAGGATAAGCATCATGTGCTTCTGCA  289

seq1  TATAGAAGGTCCCAGGAGCATTAAACTCCCTGAGAGAATGCTGAGTTCAA  347
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATAGAAGGTCCCAGGAGCATTAAACT-CCTGAGAGAATGCTGAGTTCAA  338

seq1  TTCCCAGCAACCACATGGTGGCTCACAACCATCTGAAATGGGACCTGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCAACCACATGGTGGCTCACAACCATCTGAAATGGGACCTGATG  388

seq1  CCCTCTGCTGGTGTGTCTGAAGACAGCAATGGTGCACTCACATACAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTGGTGTGTCTGAAGACAGCAATGGTGCACTCACATACAAAAA  438

seq1  TTACAGGGGAGAGAGAGAAACAGAGACAGGGACACACAGAGAGAAACAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGGAGAGAGAGAAACAGAGACAGGGACACACAGAGAGAAACAGA  488

seq1  GACAGAGAGAGAATATGAAAACTATGCAGGAGAGGAGATGGAGGAGGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGAGAATATGAAAACTATGCAGGAGAGGAGATGGAGGAGGGTC  538

seq1  CAGGAGGGTGTGGAGGGTTGAGGTTTAATAGGGACAGAGTCCACTGAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGTGTGGAGGGTTGAGGTTTAATAGGGACAGAGTCCACTGAGGA  588

seq1  TGGTAACCCTCCCACACTGTGACTTTTACCCTCAGGCTACCAAGGCCCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCCTCCCACACTGTGACTTTTACCCTCAGGCTACCAAGGCCCTC  638

seq1  CAGGACCACCTGGGCCAAACGCACTTCCTGGAATCAAAGGAGATGAGGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACCTGGGCCAAACGCACTTCCTGGAATCAAAGGAGATGAGGGG  688

seq1  AGCTCTGGAGCTGCAGGATTCCCTGGACAGAAAGGATGGGTTGGGGACCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGAGCTGCAGGATTCCCTGGACAGAAAGGATGGGTTGGGGACCC  738

seq1  AGGGCCCCAGGGCCAGCCTGGTGTACTCGGTCTTCCGGGGGAGAAAGGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCAGGGCCAGCCTGGTGTACTCGGTCTTCCGGGGGAGAAAGGTA  788

seq1  CAGTGTGGGGCCGGTGCTGTGGGCAGAGGGCTGCAGAACCAACATGGTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGGGCCGGTGCTGTGGGCAGAGGGCTGCAGAACCAACATGGTGC  838

seq1  CCTGGTCTTAACTGTCCTGTCTTCATTGCAGGGCCCAAGGGTGAACAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTTAACTGTCCTGTCTTCATTGCAGGGCCCAAGGGTGAACAAGG  888

seq1  ATTCATGGGCAACACCGGGCCCTCTGGGGCCGTGGGTGACAGAGGCCCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGGCAACACCGGGCCCTCTGGGGCCGTGGGTGACAGAGGCCCCA  938

seq1  AAGGACCCAAAGGCGACCAAGGATTCCCAGGTGAGTGGTGCCTGGGGGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCAAAGGCGACCAAGGATTCCCAGGTGAGTGGTGCCTGGGGGTG  988

seq1  ACAGCTCAGGCTAGGATGTGCCCCATTCTCTAAAGAGTGGAGAGGAAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGGCTAGGATGTGCCCCATTCTCTAAAGAGTGGAGAGGAAAGC  1038

seq1  CAGGCGGGCTGCCCGTCATCTTAGATATGGTTCTCTGCTCCTGAAATCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGGCTGCCCGTCATCTTAGATATGGTTCTCTGCTCCTGAAATCAC  1088

seq1  AGCTTCTCTTTGTCTTGCAGGTGCTCCTGGCTCTATGGGGTCCCCAGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTTTGTCTTGCAGGTGCTCCTGGCTCTATGGGGTCCCCAGGAA  1138

seq1  TTC  1150
      |||
seq2  TTC  1141

seq1: chr8_11337362_11338396
seq2: B6Ng01-004F23.g_65_1094

seq1  GAATTCATTTTTAAACAAAAGCTGGGCCCTTACTGAGGAAGCTTTACACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAAACAAAAGCTGGGCCCTTACTGAGGAAGCTTTACACG  50

seq1  TGTTTTATATTCTCTAAACATGTGCATAGTTGGCTCAGATACTCAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATATTCTCTAAACATGTGCATAGTTGGCTCAGATACTCAGACAC  100

seq1  ACAAAAATCTCCCACCAACTTGAGTAAAGGAGTATTCAACTAAGCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCTCCCACCAACTTGAGTAAAGGAGTATTCAACTAAGCCATTC  150

seq1  AGAGGGCTTGTCCACCTTAAAGTGCACAAAGAGCAAAATGCCTTCGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTGTCCACCTTAAAGTGCACAAAGAGCAAAATGCCTTCGGAAA  200

seq1  CCAGTGACGAGAAGAGAGTGGGTAAAATAAAACTGATTCCCCAAAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACGAGAAGAGAGTGGGTAAAATAAAACTGATTCCCCAAAGCATG  250

seq1  CTGGGGCTGCGGGAGCCACTGAGCCCAGAGGTTCTGTCAGCACCAGACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGCGGGAGCCACTGAGCCCAGAGGTTCTGTCAGCACCAGACGG  300

seq1  GAACCGGTGTGAGTCCAGCCAGTCAGCACATGCTAGAAACTGGCCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGGTGTGAGTCCAGCCAGTCAGCACATGCTAGAAACTGGCCTCTGG  350

seq1  CGGAGCTGAAATGGGCACCTCAGAGGTCCTGTGTGTGAGACTGAGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTGAAATGGGCACCTCAGAGGTCCTGTGTGTGAGACTGAGAGTAT  400

seq1  GCAGTCCCTCCTGCGGCTGAGGAAGGAGTGTGTATTGGTTCCTTTTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCCTCCTGCGGCTGAGGAAGGAGTGTGTATTGGTTCCTTTTGTGC  450

seq1  CGCCAACCACAGCACCTGACCGCAACAGCTCAAAGGCAGAAAGATGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAACCACAGCACCTGACCGCAACAGCTCAAAGGCAGAAAGATGGATT  500

seq1  TTCAGTCCATCTTTCTGTTTCAGTCTCTCGGGGTAGGGAAGACGTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCATCTTTCTGTTTCAGTCTCTCGGGGTAGGGAAGACGTGGCCC  550

seq1  AGATCAGGTCACAGCACCCAGGGGATGTGAGGGGATTTACTCGTAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGTCACAGCACCCAGGGGATGTGAGGGGATTTACTCGTAGTGAA  600

seq1  CAGGATGCAAAGCAGGAGAAAACCCAGGCACAGGAGAAACCTTCCAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCAAAGCAGGAGAAAACCCAGGCACAGGAGAAACCTTCCAAGAC  650

seq1  CTGTTCTTAGCGACCTGCTTTCCCCACCAAGGGCCCTAAAGGTTTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAGCGACCTGCTTTCCCCACCAAGGGCCCTAAAGGTTTTGAAG  700

seq1  CCTCCCAAAATGCTGCCACCAGATAGGGACCAAGCAGACAACACGTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAATGCTGCCACCAGATAGGGACCAAGCAGACAACACGTGAGC  750

seq1  CTGCGAGGGACTTCTCATACTCAAGCCACAACACCTGGCTTCCATGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGGGACTTCTCATACTCAAGCCACAACACCTGGCTTCCATGATTT  800

seq1  GTGGGCCTCAGTTTTGCAAGGGCACCT-GGTTTTCTGTGCCCTGAAGACA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGGGCCTCAGTTTTGCAAGGGCACCTGGGTTTTCTGTGCCCTGAAGACA  850

seq1  TGAGCTCCTCTGTCTCCATCCTATTCC-GGCCTCCCCGGCCCCAGCTCCT  898
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TGAGCTCCTCTGTCTCCATCCTATTCCGGGCCTCCCCGGCTCCAGCTCCT  900

seq1  GGCTGCTGGCCTCAAGCACATGCTGAACAAGAGGCCAGGGTTTTGTTTGG  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTGCTGGCCTCAAGCACATGCTGAACAAGAGGCCAGGG-TTTGTTTGG  949

seq1  GGCTTTGTTCTGGTCTTGAAACTACAGGGCAGTTTCTAGGAGAGTTGTGT  998
      |||||||||||||||||||||||||| ||||||||||| ||||| |||||
seq2  GGCTTTGTTCTGGTCTTGAAACTACA-GGCAGTTTCTA-GAGAG-TGTGT  996

seq1  GACCCATGAAAGTAGAAGTGGTACACTGAAGAGAAAT  1035
      ||||||||||||||| ||| |||||||| ||||||||
seq2  GACCCATGAAAGTAG-AGT-GTACACTG-AGAGAAAT  1030