BAC Information

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BAC

Clone NameB6Ng01-004H20
Chromosome8 (Build37)
Map Location 53,608,979 - 53,717,446
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H20.bB6Ng01-004H20.g
ACCDH841886DH841887
length1,1081,178
definitionDH841886|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H20, 5' end.DH841887|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,716,320 - 53,717,446)(53,608,979 - 53,610,161)
sequence
gaattcaaatctacatagcacaatgaactatttcatctgttcatccatat
tgctattaccctaagtccagagaaaattaaaattcctgctcaaataaact
gaatggacattttctgttctagttatcatcctgaaaaataccatgtgcat
taggtttctttaatcttgatattttattgatatattttctgtattgcagg
agaatgtgtttgatttccccatatgctagcatgattattataaacagtgt
gtattatcagtgcataaactactaatagaaaacaccgattaataagttgc
acattttattactcttagtttatattttaacattgggaatcataattgta
tgtaaaccatagaattgttgagagtaacaaaataagttattataaatttg
ttgttgggcagaaagcttggaatgctaataactgtcagtcaaggttaacc
ttcattattataatcatcactttctgcattgtatcaataatccaggcatc
tgtctcatcatagcacaaatacacctacttatcactttattaatatgctt
agcttctgagtgaaaaaaaaaaaacctgcctcctcattcagcgacaatat
ttaaaatagaatcaaattaaacgtatatttggaagcattgttcaagatct
tttattatttaacaagtacaaaatggcaaccgataacaatcacacaccac
tgtatcaccttgtattaaagcactgctgaaagtaaaacaaagaataaaca
gcagctttaattgcattctgctaacaagaatgtcagagctaagaaatgtc
tcagttgttcaaaccacaattttatgtataagtatgcacacgattaacac
tgtaaagcaaacagaaaattgacactatgtcagaagcatcttgtagttga
gtccactttaagttgtttatccaattaagaaataatcactggcacattac
aaagaatggtatttgagtcttcatttttcctttactattttcatgttaat
aaaaatataatctagctatattctttctgcctccttagtatgtcagtctc
tgtagctcaaatagcctgactcagtgaggatacagcaattttgctcattc
tattctaa
gaattcagttttctcatggtctcacaaagaaacccaaaggaaacaaggca
gaaaaagatgaatgaactgtaaagggatggagtagagtcaagatttcagt
aggcactaaaatttaatagcacaagtaataaagctttggataagtatgga
tttatatgtctgcatgtccctcttcaaacctgtctgagagtttctagtgt
atctctgtaatcttactatcttgggaacctgtgacaatagataatataat
tctaaggtcaaataataaaataatgtttttaaaaataattttaaatacac
ataccttaacatcagtttaaaataccaaatctatgtttcctccaaccact
gatattatcagatagtatgattcttataattatatttaaaattaaggctg
taattatgccagttaatatacagaattatcaaacctgagaaaaataattt
taacctgaatatatagtcagatgtgtgtacagactaagggctcacagtaa
agtagtcatcttcgagagaaagcgtcttgtttgattttgaataatggagt
ttttactaagagtctagcaacataaatattttgcatggcacataagttgg
atatccaaaataatagctgtacttagtattgtctaagatgctcaatagct
gaaaatctcaggacatgatcaataaaaatccctgaatatatatataagct
aataatgaagatagtggcaattattttaaaaaccgatttgttgcatgttc
aagataaaacatataattttgagtattcctatttttacttctgagggcct
ttgcttattggattgccttcccaaatatatttttgaatggttccatatat
gctcactgtgtttcaagtttttatcaaggtcctccacagagactcttggc
ccttgtctatatttcttcaataattgtgtttccacaagtgaagatcacta
gaaggaagctgatcgctttgttggaacatttcactctgtctctttctcag
gatttcagaagacatttaacactgtcacatgacttaaatagtctctttaa
atttgatcttcttttgttctcatcactttttacaatgcttgctaaaaaat
atactcttgcactaaattcataaactcaaagactgggtttcctcaatagg
taagttgatgaaatcaaaggtttccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53716320_53717446
seq2: B6Ng01-004H20.b_41_1148 (reverse)

seq1  TTAGAATAGGATATGAAGCAAAATTTGCTGGTAATCCTCACTGAGTTCAG  50
      ||||||||| ||    ||||||| ||||||   |||||||||||| ||||
seq2  TTAGAATAGAAT---GAGCAAAA-TTGCTG--TATCCTCACTGAG-TCAG  43

seq1  GCTTATTTGAGCTTAACAGAGACTTGACATACTTAAGGGAGGCAGAAAAG  100
      || ||||||||||  |||||||| |||||||||  | |||||||||||  
seq2  GC-TATTTGAGCT--ACAGAGAC-TGACATACT--AAGGAGGCAGAAA--  85

seq1  GAATTATAGCTAGATTTATATTTTTATTAACATGAAAATAGTAAAGGAAA  150
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAA-TATAGCTAGA-TTATATTTTTATTAACATGAAAATAGTAAAGGAAA  133

seq1  AATGAAGACTCAAATACCATTCTTTGTAATGTGCCAGTGATTATTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGAAGACTCAAATACCATTCTTTGTAATGTGCCAGTGATTA-TTTCTT  182

seq1  AATTGGATAAACAACTTAAAGTGGACTCAACTACAAGATGCTTTCTGACA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTGGATAAACAACTTAAAGTGGACTCAACTACAAGATGC-TTCTGACA  231

seq1  TAGTGTCAATTTTCTGTTTGCTTTACAGTGTTAATCGTGTGCATACTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCAATTTTCTGTTTGCTTTACAGTGTTAATCGTGTGCATACTTAT  281

seq1  ACATAAAATTGTGGTTTGAACAACTGAGACATTTCTTAGCTCTGACATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATTGTGGTTTGAACAACTGAGACATTTCTTAGCTCTGACATTC  331

seq1  TTGTTAGCAGAATGCAATTAAAGCTGCTGTTTATTCTTTGTTTTACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCAGAATGCAATTAAAGCTGCTGTTTATTCTTTGTTTTACTTTC  381

seq1  AGCAGTGCTTTAATACAAGGTGATACAGTGGTGTGTGATTGTTATCGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTTTAATACAAGGTGATACAGTGGTGTGTGATTGTTATCGGTT  431

seq1  GCCATTTTGTACTTGTTAAATAATAAAAGATCTTGAACAATGCTTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTGTACTTGTTAAATAATAAAAGATCTTGAACAATGCTTCCAAA  481

seq1  TATACGTTTAATTTGATTCTATTTTAAATATTGTCGCTGAATGAGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTTTAATTTGATTCTATTTTAAATATTGTCGCTGAATGAGGAGGC  531

seq1  AGGTTTTTTTTTTTTCACTCAGAAGCTAAGCATATTAATAAAGTGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTTTTTTTCACTCAGAAGCTAAGCATATTAATAAAGTGATAAG  581

seq1  TAGGTGTATTTGTGCTATGATGAGACAGATGCCTGGATTATTGATACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTATTTGTGCTATGATGAGACAGATGCCTGGATTATTGATACAAT  631

seq1  GCAGAAAGTGATGATTATAATAATGAAGGTTAACCTTGACTGACAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTGATGATTATAATAATGAAGGTTAACCTTGACTGACAGTTAT  681

seq1  TAGCATTCCAAGCTTTCTGCCCAACAACAAATTTATAATAACTTATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCCAAGCTTTCTGCCCAACAACAAATTTATAATAACTTATTTTG  731

seq1  TTACTCTCAACAATTCTATGGTTTACATACAATTATGATTCCCAATGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCAACAATTCTATGGTTTACATACAATTATGATTCCCAATGTTA  781

seq1  AAATATAAACTAAGAGTAATAAAATGTGCAACTTATTAATCGGTGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAACTAAGAGTAATAAAATGTGCAACTTATTAATCGGTGTTTTC  831

seq1  TATTAGTAGTTTATGCACTGATAATACACACTGTTTATAATAATCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAGTTTATGCACTGATAATACACACTGTTTATAATAATCATGCT  881

seq1  AGCATATGGGGAAATCAAACACATTCTCCTGCAATACAGAAAATATATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGGGGAAATCAAACACATTCTCCTGCAATACAGAAAATATATCA  931

seq1  ATAAAATATCAAGATTAAAGAAACCTAATGCACATGGTATTTTTCAGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATCAAGATTAAAGAAACCTAATGCACATGGTATTTTTCAGGAT  981

seq1  GATAACTAGAACAGAAAATGTCCATTCAGTTTATTTGAGCAGGAATTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAGAACAGAAAATGTCCATTCAGTTTATTTGAGCAGGAATTTTA  1031

seq1  ATTTTCTCTGGACTTAGGGTAATAGCAATATGGATGAACAGATGAAATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGGACTTAGGGTAATAGCAATATGGATGAACAGATGAAATAG  1081

seq1  TTCATTGTGCTATGTAGATTTGAATTC  1127
      |||||||||||||||||||||||||||
seq2  TTCATTGTGCTATGTAGATTTGAATTC  1108

seq1: chr8_53608979_53610161
seq2: B6Ng01-004H20.g_66_1243

seq1  GAATTCAGTTTTCTCATGGTCTCACAAAGAAACCCAAAGGAAACAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCTCATGGTCTCACAAAGAAACCCAAAGGAAACAAGGCA  50

seq1  GAAAAAGATGAATGAACTGTAAAGGGATGGAGTAGAGTCAAGATTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATGAATGAACTGTAAAGGGATGGAGTAGAGTCAAGATTTCAGT  100

seq1  AGGCACTAAAATTTAATAGCACAAGTAATAAAGCTTTGGATAAGTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTAAAATTTAATAGCACAAGTAATAAAGCTTTGGATAAGTATGGA  150

seq1  TTTATATGTCTGCATGTCCCTCTTCAAACCTGTCTGAGAGTTTCTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTCTGCATGTCCCTCTTCAAACCTGTCTGAGAGTTTCTAGTGT  200

seq1  ATCTCTGTAATCTTACTATCTTGGGAACCTGTGACAATAGATAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTAATCTTACTATCTTGGGAACCTGTGACAATAGATAATATAAT  250

seq1  TCTAAGGTCAAATAATAAAATAATGTTTTTAAAAATAATTTTAAATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTCAAATAATAAAATAATGTTTTTAAAAATAATTTTAAATACAC  300

seq1  ATACCTTAACATCAGTTTAAAATACCAAATCTATGTTTCCTCCAACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAACATCAGTTTAAAATACCAAATCTATGTTTCCTCCAACCACT  350

seq1  GATATTATCAGATAGTATGATTCTTATAATTATATTTAAAATTAAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATCAGATAGTATGATTCTTATAATTATATTTAAAATTAAGGCTG  400

seq1  TAATTATGCCAGTTAATATACAGAATTATCAAACCTGAGAAAAATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGCCAGTTAATATACAGAATTATCAAACCTGAGAAAAATAATTT  450

seq1  TAACCTGAATATATAGTCAGATGTGTGTACAGACTAAGGGCTCACAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGAATATATAGTCAGATGTGTGTACAGACTAAGGGCTCACAGTAA  500

seq1  AGTAGTCATCTTCGAGAGAAAGCGTCTTGTTTGATTTTGAATAATGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCATCTTCGAGAGAAAGCGTCTTGTTTGATTTTGAATAATGGAGT  550

seq1  TTTTACTAAGAGTCTAGCAACATAAATATTTTGCATGGCACATAAGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAAGAGTCTAGCAACATAAATATTTTGCATGGCACATAAGTTGG  600

seq1  ATATCCAAAATAATAGCTGTACTTAGTATTGTCTAAGATGCTCAATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAAAATAATAGCTGTACTTAGTATTGTCTAAGATGCTCAATAGCT  650

seq1  GAAAATCTCAGGACATGATCAATAAAAATCCCTGAATATATATATAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCAGGACATGATCAATAAAAATCCCTGAATATATATATAAGCT  700

seq1  AATAATGAAGATAGTGGCAATTATTTTAAAAACCGA-TTGTTGCATGTTC  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATAATGAAGATAGTGGCAATTATTTTAAAAACCGATTTGTTGCATGTTC  750

seq1  AAGATAAAACATATAATTTTGAGTATTCCTATTTTTACTTCTGAGGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAACATATAATTTTGAGTATTCCTATTTTTACTTCTGAGGGCCT  800

seq1  TTGCTTATTGGATTGCCTTCCCAAATATATTTTTGAATGGTTCCATATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTGGATTGCCTTCCCAAATATATTTTTGAATGGTTCCATATAT  850

seq1  GCTCACTGTGTTTCAAGTTTTTATCAAGGTCCTCCACAGAGACTCTTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGTGTTTCAAGTTTTTATCAAGGTCCTCCACAGAGACTCTTGGC  900

seq1  CCTTGTCTATAATTCTTCAATATTTGTGTTTCCACAAGTGAAGATCACCT  949
      ||||||||||| |||||||||| |||||||||||||||||||||||| ||
seq2  CCTTGTCTATATTTCTTCAATAATTGTGTTTCCACAAGTGAAGATCA-CT  949

seq1  AGAAGGAAGCTGATCGCTTTGTTGGAACATTTCACTCTGTCTCTTTCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGCTGATCGCTTTGTTGGAACATTTCACTCTGTCTCTTTCTCA  999

seq1  GGGATTTCAGAAGACATTTAACACTGTCACATGACTTAAATAGTCTCTTT  1049
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGATTTCAGAAGACATTTAACACTGTCACATGACTTAAATAGTCTCTTT  1048

seq1  AAATTTGATCTTCTTTTGTTCTCATCACTTTTTACAATGCTTGCT-AAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATTTGATCTTCTTTTGTTCTCATCACTTTTTACAATGCTTGCTAAAAA  1098

seq1  ATATACTCTTGCACTAAATTCATACACTCAAAAGACT-GGTTCCCTCAAT  1147
      |||||||||||||||||||||||| |||| ||||||| |||| |||||||
seq2  ATATACTCTTGCACTAAATTCATAAACTC-AAAGACTGGGTTTCCTCAAT  1147

seq1  AAGGTAAAGTTTTGATG-AATCAAAGTGTTTTCCACT  1183
       ||||||    |||||| |||||||  | ||||||||
seq2  -AGGTAA---GTTGATGAAATCAAA--GGTTTCCACT  1178