BAC Information

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BAC

Clone NameB6Ng01-004K17
Chromosome8 (Build37)
Map Location 87,667,091 - 87,805,719
singlet/doubletdoublet
Overlap geneEG624855, Olfr371, Vps35
Upstream geneCc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556
Downstream geneOrc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K17.bB6Ng01-004K17.g
ACCDH842016DH842017
length1,1461,199
definitionDH842016|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K17, 5' end.DH842017|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,804,557 - 87,805,719)(87,667,091 - 87,668,310)
sequence
gaattcttgaaaggattttctttttcattttcatttttgtttggggaaaa
agaaattctaagcccactatggaggtgcatggcctgtagtgccagctact
tgtgagcatgaagccctgaatttaaggccaacctggccagcgtgcctaaa
ctctgtctcagaaaaagaaaaacaaaaaatcttaggaaaaaaattttttc
ttgaatagaaaacttccattttcaaacttggtctttgtactaataatctg
ttttgttttgttttgttttctcaaaaatgtaggaaaataaacttgagttt
tctatgttttattagacttacttatatgctggaaatgggatatttctggt
tttgattttaattatctaagattaagttttttttctataagtaatgattt
tatataccattcataagatcagaattttttgtgaagtttttttccttgta
ttgattaatcatatctgacttttaggtttttcctgatgagtttcatcttc
agactttgaatccttttcttagagcttgtgctgaattacaccaaaatgta
aatgtgaaaaacataatcattgctttaattgacaggtaagactgctcagg
actggaagggaaatgctctgaaatggaaatgagaaacttagaacattttc
acaaatcatttgtttctgtgatttaagtactgattttaacttagttttgc
tgtagataatttagcgttcaacatctagttagtgattgcctgacttaagc
gtgaaggtttgtttgccttttcatttgaaggcatgtggatatggtttgtt
tgtttgctttttaagtttggtttttttatgtagtccagtacatgagaatg
accttgaatttctgattctcttgacttagttcaagtgctggcatagacat
gagtcaccatacctagtttacatgagttctttaatctgtttaactgatat
gtgtagacattattgtgcagatctttccttgtcaagcttatggaggaaca
gaatttttcacattatgtaaatttctttcagtagtaacttacttgattag
tttttaacttacaccacatagcatgatttagaatgcttagtaatcatcgc
tgtccattttcttaagatttttaagaaatcaattttagtagatccc
gaattccagtacagccagggctatgtagtgagaccctgtctcaaacaaaa
caaacaagctagtagagcaaacatatacctttagttttgtgtttgctgac
atcatttccagggtggctgagaagaggattagaataacagtggtctctgg
atccttctgcttcaacctctgggttatagatgtgccccacccccaccccc
acccctgcctgttgtatgttgccatggggaatcagacccaagactttgca
tgctaggtgagtctctgtgtattgagcaaatcctgcggctctattacagc
ttaaaattctctaatacacccaatgacgtcaaacatgaaggaggcattca
atgatgctttatgaagcactgttattctaacctatgagtactgctcatga
catacctcagctccagaattttaactcgtttgcatataacttgaacttaa
gttttgaaaatgtagctcttataagtaagatgtattattcttttttattt
catgtgctctaatgtttcatgtctgtatgccagtgttggatcccctggaa
ctggagttacagacaattgtgagctgccatgtgggcaccagaattgaacc
ctcttaatcactgagccatctctccagccctggttatattattcttatag
gtttagatcttattttgtattcaaattcttaataatttttaaaataaaaa
ttcatggtagggcaactaaccaaattgtagttgtagtagtttaagagttt
gagtttttgttcaagggatgaaactaaaaaatgggaactttaaaaaaaaa
ggattcttttgataatgtaacaaggaagtaaaataaaattaattatgaag
catgcgaaaggacagctttgagtcaaacccaaagtcaaagggcaggcaat
atgcgcatattggagaaagtataaaagcaagatttctatgatctgtagat
atagacaattactgttactggctccagcacaaggagcttgccaagaagca
tggaaagatattctgtgccctctaaacaggctcatccgcagtagaggtga
tcagtatacggtctggtcttcttcaccttaggtattgctattccaatggc
ctctgtctcaactggtccaatggatacctcaggataataggtcttcgaag
caatagaggtaaaaagctcttagccttggttctcctgatccccagctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87804557_87805719
seq2: B6Ng01-004K17.b_49_1194 (reverse)

seq1  GGGATCTACTAAAAATGTGATTCTTAAAAATTCTTTATGAAAATGTGACA  50
      |||||||||||||| ||   |||||||||||   ||| ||||||| ||||
seq2  GGGATCTACTAAAATTG-ATTTCTTAAAAAT--CTTAAGAAAATG-GACA  46

seq1  GCAGAATGATTACTTAAGCATTCTTAATCATGCTTATGTTGTTGTTAGTT  100
      ||   |||||||| |||||||||| |||||||| |||| || ||| ||||
seq2  GC--GATGATTAC-TAAGCATTCTAAATCATGC-TATG-TGGTGTAAGTT  91

seq1  TAAAAAACTAAATCAAGTAAGTTACTACTGAAAGATAATTTACATAATTG  150
        ||||||| ||||||||||||||||||||||||| ||||||||||| ||
seq2  --AAAAACT-AATCAAGTAAGTTACTACTGAAAGA-AATTTACATAA-TG  136

seq1  TGAAAAATTCTGTTCCTCCATAAGCTTTGGACAAGGAAAGATCTGCACAA  200
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TGAAAAATTCTGTTCCTCCATAAGCTT--GACAAGGAAAGATCTGCACAA  184

seq1  TAATGTCTACACATATCAGTTAAACAGATTAAAGAACTCATTGTAAACTA  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATGTCTACACATATCAGTTAAACAGATTAAAGAACTCA-TGTAAACTA  233

seq1  GGTATGGTGACTCATGTCTATGCCAGCACTTGAACTAAGTCAAGAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTGACTCATGTCTATGCCAGCACTTGAACTAAGTCAAGAGAATC  283

seq1  AGAAATTCAAGGTCATTCTCATGTACTGGACTACATAAAAAAACCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCAAGGTCATTCTCATGTACTGGACTACATAAAAAAACCAAACT  333

seq1  TAAAAAGCAAACAAACAAACCATATCCACATGCCTTCAAATGAAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAACAAACAAACCATATCCACATGCCTTCAAATGAAAAGGCA  383

seq1  AACAAACCTTCACGCTTAAGTCAGGCAATCACTAACTAGATGTTGAACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTTCACGCTTAAGTCAGGCAATCACTAACTAGATGTTGAACGC  433

seq1  TAAATTATCTACAGCAAAACTAAGTTAAAATCAGTACTTAAATCACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTACAGCAAAACTAAGTTAAAATCAGTACTTAAATCACAGAA  483

seq1  ACAAATGATTTGTGAAAATGTTCTAAGTTTCTCATTTCCATTTCAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGATTTGTGAAAATGTTCTAAGTTTCTCATTTCCATTTCAGAGCA  533

seq1  TTTCCCTTCCAGTCCTGAGCAGTCTTACCTGTCAATTAAAGCAATGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCAGTCCTGAGCAGTCTTACCTGTCAATTAAAGCAATGATTA  583

seq1  TGTTTTTCACATTTACATTTTGGTGTAATTCAGCACAAGCTCTAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCACATTTACATTTTGGTGTAATTCAGCACAAGCTCTAAGAAAA  633

seq1  GGATTCAAAGTCTGAAGATGAAACTCATCAGGAAAAACCTAAAAGTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAAGTCTGAAGATGAAACTCATCAGGAAAAACCTAAAAGTCAGA  683

seq1  TATGATTAATCAATACAAGGAAAAAAACTTCACAAAAAATTCTGATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTAATCAATACAAGGAAAAAAACTTCACAAAAAATTCTGATCTTA  733

seq1  TGAATGGTATATAAAATCATTACTTATAGAAAAAAAACTTAATCTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTATATAAAATCATTACTTATAGAAAAAAAACTTAATCTTAGAT  783

seq1  AATTAAAATCAAAACCAGAAATATCCCATTTCCAGCATATAAGTAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATCAAAACCAGAAATATCCCATTTCCAGCATATAAGTAAGTCT  833

seq1  AATAAAACATAGAAAACTCAAGTTTATTTTCCTACATTTTTGAGAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATAGAAAACTCAAGTTTATTTTCCTACATTTTTGAGAAAACA  883

seq1  AAACAAAACAAAACAGATTATTAGTACAAAGACCAAGTTTGAAAATGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAGATTATTAGTACAAAGACCAAGTTTGAAAATGGAA  933

seq1  GTTTTCTATTCAAGAAAAAATTTTTTTCCTAAGATTTTTTGTTTTTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATTCAAGAAAAAATTTTTTTCCTAAGATTTTTTGTTTTTCTTT  983

seq1  TTCTGAGACAGAGTTTAGGCACGCTGGCCAGGTTGGCCTTAAATTCAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACAGAGTTTAGGCACGCTGGCCAGGTTGGCCTTAAATTCAGGG  1033

seq1  CTTCATGCTCACAAGTAGCTGGCACTACAGGCCATGCACCTCCATAGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTCACAAGTAGCTGGCACTACAGGCCATGCACCTCCATAGTGG  1083

seq1  GCTTAGAATTTCTTTTTCCCCAAACAAAAATGAAAATGAAAAAGAAAATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAATTTCTTTTTCCCCAAACAAAAATGAAAATGAAAAAGAAAATC  1133

seq1  CTTTCAAGAATTC  1163
      |||||||||||||
seq2  CTTTCAAGAATTC  1146

seq1: chr8_87667091_87668310
seq2: B6Ng01-004K17.g_67_1265

seq1  GAATTCCAGTACAGCCAGGGCTATGTAGTGAGACCCTGTCTCAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGCCAGGGCTATGTAGTGAGACCCTGTCTCAAACAAAA  50

seq1  CAAACAAGCTAGTAGAGCAAACATATACCTTTAGTTTTGTGTTTGCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGCTAGTAGAGCAAACATATACCTTTAGTTTTGTGTTTGCTGAC  100

seq1  ATCATTTCCAGGGTGGCTGAGAAGAGGATTAGAATAACAGTGGTCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCCAGGGTGGCTGAGAAGAGGATTAGAATAACAGTGGTCTCTGG  150

seq1  ATCCTTCTGCTTCAACCTCTGGGTTATAGATGTGCCCCACCCCCACCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTGCTTCAACCTCTGGGTTATAGATGTGCCCCACCCCCACCCCC  200

seq1  ACCCCTGCCTGTTGTATGTTGCCATGGGGAATCAGACCCAAGACTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCCTGTTGTATGTTGCCATGGGGAATCAGACCCAAGACTTTGCA  250

seq1  TGCTAGGTGAGTCTCTGTGTATTGAGCAAATCCTGCGGCTCTATTACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGTGAGTCTCTGTGTATTGAGCAAATCCTGCGGCTCTATTACAGC  300

seq1  TTAAAATTCTCTAATACACCCAATGACGTCAAACATGAAGGAGGCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCTCTAATACACCCAATGACGTCAAACATGAAGGAGGCATTCA  350

seq1  ATGATGCTTTATGAAGCACTGTTATTCTAACCTATGAGTACTGCTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTTTATGAAGCACTGTTATTCTAACCTATGAGTACTGCTCATGA  400

seq1  CATACCTCAGCTCCAGAATTTTAACTCGTTTGCATATAACTTGAACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCAGCTCCAGAATTTTAACTCGTTTGCATATAACTTGAACTTAA  450

seq1  GTTTTGAAAATGTAGCTCTTATAAGTAAGATGTATTATTCTTTTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAAATGTAGCTCTTATAAGTAAGATGTATTATTCTTTTTTATTT  500

seq1  CATGTGCTCTAATGTTTCATGTCTGTATGCCAGTGTTGGATCCCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCTAATGTTTCATGTCTGTATGCCAGTGTTGGATCCCCTGGAA  550

seq1  CTGGAGTTACAGACAATTGTGAGCTGCCATGTGGGCACCAGAATTGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACAGACAATTGTGAGCTGCCATGTGGGCACCAGAATTGAACC  600

seq1  CTCTTAATCACTGAGCCATCTCTCCAGCCCTGGTTATATTATTCTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATCACTGAGCCATCTCTCCAGCCCTGGTTATATTATTCTTATAG  650

seq1  GTTTAGATCTTATTTTGTATTCAAATTCTTAATAATTTTTAAAATAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATCTTATTTTGTATTCAAATTCTTAATAATTTTTAAAATAAAAA  700

seq1  TTCATGGTAGGGCAACTAACCAAATTGTAGTTGTAGTAGTTTAAGAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTAGGGCAACTAACCAAATTGTAGTTGTAGTAGTTTAAGAGTTT  750

seq1  GAGTTTTTGTTCAAGGGATGAAACTAAAAAATGGGAACTTTAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTGTTCAAGGGATGAAACTAAAAAATGGGAACTTTAAAAAAAAA  800

seq1  GGATTCTTTTGATAATGTAACAAGGAAGTAAAATAAAATTAATTATGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTTGATAATGTAACAAGGAAGTAAAATAAAATTAATTATGAAG  850

seq1  CATGCG-AAGGACAGCTTTGAGTCAAACCCAAAGTCAAGGGGCAGGCAAT  899
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGCGAAAGGACAGCTTTGAGTCAAACCCAAAGTCAAAGGGCAGGCAAT  900

seq1  ATGCGCATATTGGAGAAAGTATAAAAGCAAGATTTCTATGATCTGTAGAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCGCATATTGGAGAAAGTATAAAAGCAAGATTTCTATGATCTGTAG-A  949

seq1  TATAGACAAATACTGTTACTGGCTCCCAGCAC-AGGAGCTTTGCCAAGGA  998
      ||||||||| |||||||||||||| ||||||| |||||| ||||||| ||
seq2  TATAGACAATTACTGTTACTGGCT-CCAGCACAAGGAGC-TTGCCAA-GA  996

seq1  AGCAATGGAAAGATA-TCTGTGCCCTCTTAAACAGGCTCATCCGCAGGTA  1047
      ||| ||||||||||| ||||||||||| |||||||||||||||||| |||
seq2  AGC-ATGGAAAGATATTCTGTGCCCTC-TAAACAGGCTCATCCGCA-GTA  1043

seq1  GAGGTGATTCTGTTATAC-GTCTGGTCTTTCTCACCTTAGTATTTGGTCA  1096
      ||||||| || | ||||| ||||||||||  |||||||||   |||  | 
seq2  GAGGTGA-TCAG-TATACGGTCTGGTCTTCTTCACCTTAGGTATTG--CT  1089

seq1  TTTCAAATGGCTCCTGT-TCTACTGGTCCAA-GGAGACCCACAGGATAAA  1144
       ||| ||||||  |||| || |||||||||| ||| | || |||||| ||
seq2  ATTCCAATGGCCTCTGTCTCAACTGGTCCAATGGATA-CCTCAGGAT-AA  1137

seq1  TAGGTCTTTCAGAAGGAAATAAGATGTAAAAAAGCCCTAAGCCTTTGGTT  1194
      ||||||||   |||| ||   ||| || ||||||| || |||| ||||||
seq2  TAGGTCTT--CGAAGCAA--TAGAGGT-AAAAAGCTCTTAGCC-TTGGTT  1181

seq1  CCCCTTGATCCCAGTCTTCCAGCTCT  1220
      | || ||||||       ||||||||
seq2  CTCC-TGATCC-------CCAGCTCT  1199