BAC Information

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BAC

Clone NameB6Ng01-004M24
Chromosome8 (Build37)
Map Location 115,274,781 - 115,383,057
singlet/doubletdoublet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M24.bB6Ng01-004M24.g
ACCDH842121DH842122
length1,031778
definitionDH842121|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M24, 5' end.DH842122|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,382,013 - 115,383,057)(115,274,781 - 115,275,558)
sequence
gaattctgtgcctgacgacaagtaggtttgtctccttgtattctcatcaa
tctataaaattattccatgaaatgtggccattcaaataaccattgttttg
tgtcaaaaaataataagaggaagtgaagaaagaaaaaagaggaaattgtt
attatggttttataatagtttaagaaaatgaaatttaaaaatgtagtcat
tcaaaatctgatgttttttactctatgctcagatagctacccacttttct
atctttccctttagtgtttggaccatctccactgcataaaaaacccaaat
ttggtaaagccaacaaaaagacgtgtttttttttttttaacctcaataat
ttttcttagcttgggatttttcctggagtcatgcagctaagaaattttct
tctatgtagagctgaaacattagtggttttcggcaaaagcttctaaggcg
aataattccattttgcagtgaatcacatcctttcttcaaacttattctga
tatttcagtcattattttctgttgtcgaatgattgctgcatttataccca
tctaaagtaagtgggtttcctaagaggactgatggccccaccagtaggtc
tctgagaaactagacatcatttcctttctgagcaaaataaaacaggcaag
gcaagcttggcactttatgcatcagatagtaataatacctcagagacgtt
tgcccaaaccgcaaagagggagcgggggaacacctgaccacatttgatga
tttgacctatggtctactgaataccacaggaagatatccttgctactgtg
attcctgggtaactctaggtgccccatgccagggtttcatgtgacctttg
gataatctctgttacctccacgaagaccattccctcttctctgttgatct
ttatgtgggtgaagctgccatctgccatgctctcaagtcaaagctgatga
catcagttcgtgatacttattagcttgtatcgtttctgcaacctctgagt
agaaaaaaagtacattttagtaaatcatttt
gaattctttacaagcatattaacaagatgtaaaaaaacaatcagacccct
gagtctttagcttcatagaatagtggaaaaatataaggggttggtaggag
tgattaacagtttctgaggtgtagtgattagtctgaatcaaatacatgtt
tgggcatagaagtaactataataatttcatcaatgaaatatgaataagct
atgtcatgttgtctactgaaagaagtcagatgacacattgaaaaaatgtg
ccttatttgattgggtttctcttcatttattatatcaatgtactctcaag
ggtaattgctttaaaatatctttgactggtgaaacagaaaatacagtaag
gacttttgaacattataggtttcacttgtgtcttttgtgggtacaactga
ttttgacagttgtactattatgttactagtgtaacatgacatcttttaaa
agatgaactgaatatgagtgagcttgacaatgagtaggtaagacactgtc
agaaagctgaaaaacaggttgatgtcaaagtatgacataaatgcagtagt
ataaaccctacaataccattaggttcatgtcttcctaatgatgcctttgg
gaaggcagaaatatccttgtccttaaatactatcacttggccgtggaaat
gatataataagacagagcacaaggccaatttaatatgtacttgaagtgtt
tatatatatatatgtatatatatatatatatatataatataaactatata
ttatattatatatatttgtgtatggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_115382013_115383057
seq2: B6Ng01-004M24.b_46_1076 (reverse)

seq1  AAAATGGAATTTTTACTAAAAATGTAACTTTTTTTTCCTACTTCAGGAAG  50
      ||||||     |||||| ||||||| |||||||||  |||| ||||  ||
seq2  AAAATG----ATTTACT-AAAATGT-ACTTTTTTT--CTAC-TCAG--AG  39

seq1  TTTGCAGATACGATACAAGCTAAATAAGTATCACGAACCTGATGTCATCA  100
       ||||||| |||||||||||| ||||||||||||||| ||||||||||||
seq2  GTTGCAGAAACGATACAAGCT-AATAAGTATCACGAA-CTGATGTCATCA  87

seq1  GCTTTGACTTGAAGAGCATGGCAGATGGGCAGCTTCA-CCACATAAAGAT  149
      ||||||||||| |||||||||||||| |||||||||| ||||||||||||
seq2  GCTTTGACTTG-AGAGCATGGCAGAT-GGCAGCTTCACCCACATAAAGAT  135

seq1  CAACAGAGAAGAGGGAATGGTCTTCGTGGAGGTAACAGAGATTATCCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAAGAGGGAATGGTCTTCGTGGAGGTAACAGAGATTATCCAAA  185

seq1  GGTCACATGAAACCCTGGCATGGGGCACCTAGAGTTACCCAGGAATCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATGAAACCCTGGCATGGGGCACCTAGAGTTACCCAGGAATCACA  235

seq1  GTAGCAAGGATATCTTCCTGTGGTATTCAGTAGACCATAGGTCAAATCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGGATATCTTCCTGTGGTATTCAGTAGACCATAGGTCAAATCAT  285

seq1  CAAATGTGGTCAGGTGTTCCCCCGCTCCCTCTTTGCGGTTTGGGCAAACG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGGTCAGGTGTTCCCCCGCTCCCTCTTTGCGGTTTGGGCAAACG  335

seq1  TCTCTGAGGTATTATTACTATCTGATGCATAAAGTGCCAAGCTTGCCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGTATTATTACTATCTGATGCATAAAGTGCCAAGCTTGCCTTG  385

seq1  CCTGTTTTATTTTGCTCAGAAAGGAAATGATGTCTAGTTTCTCAGAGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTATTTTGCTCAGAAAGGAAATGATGTCTAGTTTCTCAGAGACC  435

seq1  TACTGGTGGGGCCATCAGTCCTCTTAGGAAACCCACTTACTTTAGATGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGGGCCATCAGTCCTCTTAGGAAACCCACTTACTTTAGATGGG  485

seq1  TATAAATGCAGCAATCATTCGACAACAGAAAATAATGACTGAAATATCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGCAGCAATCATTCGACAACAGAAAATAATGACTGAAATATCAG  535

seq1  AATAAGTTTGAAGAAAGGATGTGATTCACTGCAAAATGGAATTATTCGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTGAAGAAAGGATGTGATTCACTGCAAAATGGAATTATTCGCC  585

seq1  TTAGAAGCTTTTGCCGAAAACCACTAATGTTTCAGCTCTACATAGAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCTTTTGCCGAAAACCACTAATGTTTCAGCTCTACATAGAAGAA  635

seq1  AATTTCTTAGCTGCATGACTCCAGGAAAAATCCCAAGCTAAGAAAAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTAGCTGCATGACTCCAGGAAAAATCCCAAGCTAAGAAAAATTA  685

seq1  TTGAGGTTAAAAAAAAAAAAACACGTCTTTTTGTTGGCTTTACCAAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTAAAAAAAAAAAAACACGTCTTTTTGTTGGCTTTACCAAATTT  735

seq1  GGGTTTTTTATGCAGTGGAGATGGTCCAAACACTAAAGGGAAAGATAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTATGCAGTGGAGATGGTCCAAACACTAAAGGGAAAGATAGAA  785

seq1  AAGTGGGTAGCTATCTGAGCATAGAGTAAAAAACATCAGATTTTGAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTAGCTATCTGAGCATAGAGTAAAAAACATCAGATTTTGAATGA  835

seq1  CTACATTTTTAAATTTCATTTTCTTAAACTATTATAAAACCATAATAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTTAAATTTCATTTTCTTAAACTATTATAAAACCATAATAACA  885

seq1  ATTTCCTCTTTTTTCTTTCTTCACTTCCTCTTATTATTTTTTGACACAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTTTTTTCTTTCTTCACTTCCTCTTATTATTTTTTGACACAAA  935

seq1  ACAATGGTTATTTGAATGGCCACATTTCATGGAATAATTTTATAGATTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTTATTTGAATGGCCACATTTCATGGAATAATTTTATAGATTGA  985

seq1  TGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATACAAGGAGACAAACCTACTTGTCGTCAGGCACAGAATTC  1031

seq1: chr8_115274781_115275558
seq2: B6Ng01-004M24.g_67_844

seq1  GAATTCTTTACAAGCATATTAACAAGATGTAAAAAAACAATCAGACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAAGCATATTAACAAGATGTAAAAAAACAATCAGACCCCT  50

seq1  GAGTCTTTAGCTTCATAGAATAGTGGAAAAATATAAGGGGTTGGTAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTAGCTTCATAGAATAGTGGAAAAATATAAGGGGTTGGTAGGAG  100

seq1  TGATTAACAGTTTCTGAGGTGTAGTGATTAGTCTGAATCAAATACATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACAGTTTCTGAGGTGTAGTGATTAGTCTGAATCAAATACATGTT  150

seq1  TGGGCATAGAAGTAACTATAATAATTTCATCAATGAAATATGAATAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGAAGTAACTATAATAATTTCATCAATGAAATATGAATAAGCT  200

seq1  ATGTCATGTTGTCTACTGAAAGAAGTCAGATGACACATTGAAAAAATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTTGTCTACTGAAAGAAGTCAGATGACACATTGAAAAAATGTG  250

seq1  CCTTATTTGATTGGGTTTCTCTTCATTTATTATATCAATGTACTCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTGATTGGGTTTCTCTTCATTTATTATATCAATGTACTCTCAAG  300

seq1  GGTAATTGCTTTAAAATATCTTTGACTGGTGAAACAGAAAATACAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGCTTTAAAATATCTTTGACTGGTGAAACAGAAAATACAGTAAG  350

seq1  GACTTTTGAACATTATAGGTTTCACTTGTGTCTTTTGTGGGTACAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAACATTATAGGTTTCACTTGTGTCTTTTGTGGGTACAACTGA  400

seq1  TTTTGACAGTTGTACTATTATGTTACTAGTGTAACATGACATCTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGTTGTACTATTATGTTACTAGTGTAACATGACATCTTTTAAA  450

seq1  AGATGAACTGAATATGAGTGAGCTTGACAATGAGTAGGTAAGACACTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACTGAATATGAGTGAGCTTGACAATGAGTAGGTAAGACACTGTC  500

seq1  AGAAAGCTGAAAAACAGGTTGATGTCAAAGTATGACATAAATGCAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGAAAAACAGGTTGATGTCAAAGTATGACATAAATGCAGTAGT  550

seq1  ATAAACCCTACAATACCATTAGGTTCATGTCTTCCTAATGATGCCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTACAATACCATTAGGTTCATGTCTTCCTAATGATGCCTTTGG  600

seq1  GAAGGCAGAAATATCCTTGTCCTTAAATACTATCACTTGGCCGTGGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAAATATCCTTGTCCTTAAATACTATCACTTGGCCGTGGAAAT  650

seq1  GATATAATAAGACAGAGCACAAGGCCAATTTAATATGTACTTGAAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATAAGACAGAGCACAAGGCCAATTTAATATGTACTTGAAGTGTT  700

seq1  TATATATATATATGTATATATATATATATATATATAATATAAACTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGTATATATATATATATATATATAATATAAACTATATA  750

seq1  TTATATTATATATATTTGTGTATGGATG  778
      ||||||||||||||||||||||||||||
seq2  TTATATTATATATATTTGTGTATGGATG  778