BAC Information

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BAC

Clone NameB6Ng01-004P12
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,568 - 1,120,82630,505,574 - 30,506,738
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P12.bB6Ng01-004P12.g
ACCDH842234DH842235
length9381,131
definitionDH842234|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P12, 5' end.DH842235|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,568 - 1,120,826)(30,505,574 - 30,506,738)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttatggagtccaccttcttgaattctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgctggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttttttttttttttttttttttt
tattttttatttttttttccagtttttattaggtatttaactcatttaca
tttccaatgctataccaaaagtcccccatatccacccacccccactcccc
tgcccacccactccccctttttggccctggtgttcccctgtactggggca
tataaagtttgcaagtccaatgggcctctctttccagtgatggccgacta
ggccatcttttgatatatatgcagctagagtcaagagctccggggtactg
gttagttcataatgttgttccacctatagggatgcagatccctttagctc
cttggctactttctctagctcctccattgggagccctatgatccatccat
tagctgactgtgagcatccacttctgtgtttgctaggccccggcatagtc
tcacaagagacagctacatctgggtcctttcaataaaatcttgctagtgt
atgcaatggtgtcagcgtttggatgctgattatggggtggatccctggat
atggcagtctctacatggtccatccttttatctcagctccaaactttgtc
tctgtaactccttccatgggtgttttgttcccaaatctaaagaggggcat
agtgtccacacttcagtcttcattctttcttgagtttcatgttgtttagc
aaattatatctttgtatcttgggtatcctaggtttggg
gaattcattctccaaatagatgtaccttcaccttaccaaaaagttacagt
ctcaaagcttaaggaatgttgaatataagcccttagttgccattagaagc
ttgaagcactttctgaatgataggcatagggtatccaaagaagacagagc
aaagtttcaggaaaagccttctcccaggccaaatctcagaaatgatgaaa
tacattaggaaaggacatgaaaccaggtactactgtactaaaatgcatag
gcttccatgctcacttccattcacacatctgtttgtatagcagacgggtg
aaagcaaacacaaaggtaagtgttcaacccttgaaagacgtgaagcacag
tgggtaacacctaaatctatagcgtttctcacctaggcatattgcttact
ctgcagtaggattgctctacaagtagagcctaaactgctagctttagagt
tatttccacatggtgtgaaagaactgacttgagagctatcagagaagctg
aaaatcgagaatggggatcacagagaaaggagatctacagatcgatgatt
ctccagtttttatctaaactctcggcaactatttacttgaccaaagataa
gattatatgtgtgtggctctcaggagctccacagctagaaaggtgtgata
tttctgctgaagtcttgtcaacttgcagagttttgataaagatcttctag
ttttacaccctcctattagaggtatggcttaaaagatatggcttaacatt
tcaaagggatcagaaaatacattagatgaaatgaatacctgattgctacc
cccagttccacattccccattgctacacacctcaattcaattccacatat
ctccaaatttttaacaaagaattgttcctgtctaaaggaaatacagagac
aaagagtggagcagagtctgaaggaaaggccatctggagactgccccact
gggaatccatcccacatgcagatacaaatcagacactatgcagatacaga
gtgctgctgacagagctgtacagctgtctctgagaggcctgcgatctgac
aatacgatgtggtgctgcagcaacatcaactggacaaggactccactgga
gatagcaatgactgaggagaagcccttgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120568_1120826
seq2: B6Ng01-004P12.b_288_546

seq1  TTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAAC  50
      |||||||||| ||||| ||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTTTATTTTTTATTTTTTTTTCCAGTTTTTATTAGGTATTTAAC  50

seq1  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  100

seq1  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGT  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGT  150

seq1  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  200

seq1  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  250

seq1  GGGGTACTG  259
      |||||||||
seq2  GGGGTACTG  259

seq1: chr8_30505574_30506738
seq2: B6Ng01-004P12.g_68_1198

seq1  GAATTCATTCTCCAAATAGATGTACCTTCACCTTACCAAAAAGTTACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCCAAATAGATGTACCTTCACCTTACCAAAAAGTTACAGT  50

seq1  CTCAAAGCTTAAGGAATGTTGAATATAAGCCCTTAGTTGCCATTAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCTTAAGGAATGTTGAATATAAGCCCTTAGTTGCCATTAGAAGC  100

seq1  TTGAAGCACTTTCTGAATGATAGGCATAGGGTATCCAAAGAAGACAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCACTTTCTGAATGATAGGCATAGGGTATCCAAAGAAGACAGAGC  150

seq1  AAAGTTTCAGGAAAAGCCTTCTCCCAGGCCAAATCTCAGAAATGATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAGGAAAAGCCTTCTCCCAGGCCAAATCTCAGAAATGATGAAA  200

seq1  TACATTAGGAAAGGACATGAAACCAGGTACTACTGTACTAAAATGCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGGAAAGGACATGAAACCAGGTACTACTGTACTAAAATGCATAG  250

seq1  GCTTCCATGCTCACTTCCATTCACACATCTGTTTGTATAGCAGACGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATGCTCACTTCCATTCACACATCTGTTTGTATAGCAGACGGGTG  300

seq1  AAAGCAAACACAAAGGTAAGTGTTCAACCCTTGAAAGACGTGAAGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAACACAAAGGTAAGTGTTCAACCCTTGAAAGACGTGAAGCACAG  350

seq1  TGGGTAACACCTAAATCTATAGCGTTTCTCACCTAGGCATATTGCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAACACCTAAATCTATAGCGTTTCTCACCTAGGCATATTGCTTACT  400

seq1  CTGCAGTAGGATTGCTCTACAAGTAGAGCCTAAACTGCTAGCTTTAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAGGATTGCTCTACAAGTAGAGCCTAAACTGCTAGCTTTAGAGT  450

seq1  TATTTCCACATGGTGTGAAAGAACTGACTTGAGAGCTATCAGAGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACATGGTGTGAAAGAACTGACTTGAGAGCTATCAGAGAAGCTG  500

seq1  AAAATCGAGAATGGGGATCACAGAGAAAGGAGATCTACAGATCGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGAGAATGGGGATCACAGAGAAAGGAGATCTACAGATCGATGATT  550

seq1  CTCCAGTTTTTATCTAAACTCTCGGCAACTATTTACTTGACCAAAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTTTATCTAAACTCTCGGCAACTATTTACTTGACCAAAGATAA  600

seq1  GATTATATGTGTGTGGCTCTCAGGAGCTCCACAGCTAGAAAGGTGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATGTGTGTGGCTCTCAGGAGCTCCACAGCTAGAAAGGTGTGATA  650

seq1  TTTCTGCTGAAGTCTTGTCAACTTGCAGAGTTTTGATAAAGATCTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGAAGTCTTGTCAACTTGCAGAGTTTTGATAAAGATCTTCTAG  700

seq1  TTTTACACCCTCCTATTAGAGGTATGGCTTAAAAGATATGGCTTAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACCCTCCTATTAGAGGTATGGCTTAAAAGATATGGCTTAACATT  750

seq1  TCAAAGGGATCAGAAAATACATTAGATGAAATGAATACCTGATTGCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGATCAGAAAATACATTAGATGAAATGAATACCTGATTGCTACC  800

seq1  CCCAGTTCCACATTCCCCATTGCTACACACCTCAATTCAATTCCACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCCACATTCCCCATTGCTACACACCTCAATTCAATTCCACATAT  850

seq1  CTCCAAATTTTTAACAAAGAATTGTTCCTGTCTAAAGGAAATACAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATTTTTAACAAAGAATTGTTCCTGTCTAAAGGAAATACAGAGAC  900

seq1  AAAGAGTGGAGCAGAGTCTGAAGGAAAGGCCATCTGGAGACTGCCCCACC  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGAGTGGAGCAGAGTCTGAAGGAAAGGCCATCTGGAGACTGCCCCA-C  949

seq1  TGGGAATCCATCCCACATGCAGATACCAAAACCAGACACTATTGCAGATA  1000
      ||||||||||||||||||||||||||  ||| ||||||||| ||||||||
seq2  TGGGAATCCATCCCACATGCAGATAC--AAATCAGACACTA-TGCAGATA  996

seq1  CCAAGAAGTGCTTGCTGACAGGAGCCTGGTACAGCTGTCTCCTGAGAGGC  1050
      |  || ||||| |||||||| ||||   |||||||||||| |||||||| 
seq2  C--AG-AGTGC-TGCTGACA-GAGC--TGTACAGCTGTCT-CTGAGAGG-  1037

seq1  CCTGCCAGATCCTGACCAATACAGATGTGGTTGCTTGCAGCCAACCATCC  1100
      |||||  ||| |||| |||||| ||||||| ||| ||||||  | ||| |
seq2  CCTGC--GAT-CTGA-CAATAC-GATGTGG-TGC-TGCAGC--AACAT-C  1077

seq1  AACTGAGCACAGGAACCCCACTGGAGGAGTTAGGCAATGGACTGAAGGAG  1150
      ||||  | ||| | || |||||   |||| || ||||| ||||    |||
seq2  AACT--GGACAAGGACTCCACT---GGAGATA-GCAAT-GACT----GAG  1116

seq1  GAGAGGCCCTTGATC  1165
      |||| ||||||||||
seq2  GAGAAGCCCTTGATC  1131