BAC Information

Click to search

BAC

Clone NameB6Ng01-005G13
Chromosome8 (Build37)
Map Location 102,987,368 - 103,174,191
singlet/doubletdoublet
Overlap geneLOC100042086, LOC100042092, LOC384895
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G13.bB6Ng01-005G13.g
ACCDH842553DH842554
length1,152938
definitionDH842553|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G13, 5' end.DH842554|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,987,368 - 102,988,517)(103,173,624 - 103,174,191)
sequence
gaattccataataatagctaatgaattatttataatagcaagaaatgagc
agaaaaatgcataccagacatgaggaagagtgaactctgagcaccgggca
catctggctggcaagcatacttttactttgaaatactctgtaagcaaaat
gtgacgtgttcaagctgaattcgaacttgaaagaaagtaaaaaaggaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaagagaga
aagagagagagaatgagagagagaaagagagagagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaggactgtt
tttctcactctgtcaggctagtataagtaaatattgttgagtgaatagct
tctaaattataggctttaattttcacagttctgagtgtcaaggcatccat
gattaagtcagtgttagatgcaaaggctggggtaccaactgcctttgtgg
ttattgaatggtgtcctctagttctgtttttcatatgatggaaaatccac
acatctgaatgattttaagaacatttagccactaacattcaggcttaact
ccatacttctgaggatttcggcatgagagttctgtctggtacattgtgaa
ggctgagctctgcagccagggaagaatgacgttgggacagcaaggagatg
gaagaaaatgtgagacatcatagactggtgcttcaggctttatctatttg
catgaaggcactcacatttagactcaatgacaaatttataaagaatcaca
caggagcagcatttttccagaaatgattatataatggatgactgaaaaat
catatttactgtttatgcaaagctacattgaatatctggtatgcacaatc
tttagttgactcactctaaaagtccatactagcaccatactttattgact
tttaaatgtctttatgcctctattatctttggggatttgatttatctaat
tttgtatatggtagtaacactgtcaattattttctgaaagatgatgaatt
gatattgttccagtgtaatttttatcctcttcttttaatagaattgccat
tctgtcctggacaggttatttgtatagatctgtagagatgaacccaagct
ga
gaattctcacatgatggctgaccttattgattattctccacaaaccacaa
actaaggataagatcctgttgctgaagataacacccatacaactcaacaa
acatagaaaaatcaagctcatgcctacctaacacttagttctgaaaactg
atatacatgaaactgaaaggaattctagacccaaagagaaggatacattc
taacccagccacaaactctaggtggtggtttgaatagtcttagcccatgg
aaattggcacaattaggaggggtggccttgtagcatgtgtccttattgga
gtaagtatgtcacttggtgggggagggggctttgatgtcctatgttcttt
gtacacccaatatggaagagacccttctcctgactgcctggagaaatcag
actggatcacttcagaacaagatatagaacactcggctccttctctaatg
ccatacctgcttggaaggtgccatgcttccactgtgataataatggactg
aatctctaaaactgtaagccaacctcaattaaatgttgttctttatagga
gttgccttggtcatggtgccttttcataacagtaaagccataagacaccc
ttcaattattgcatgcctgctagatatgcttgtcccatcatggcaccaaa
tatgtgggaataaccaaccaacatgtaattatatttaaggtccagtttag
ttaatggactcatcacatttgtggtactgtgcaagtagctgagacctatg
atgagataagccaaggacctagaggaaaaccaaatagactttgtgagtaa
agtaacatagtcataaatgactcttaaaatcattttactatgtactcaga
tcaatgaagcatctttcatttggtaagtctgtgtttgaaacacctttctg
atgatccttacagtatggagcctaacatatttccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102987368_102988517
seq2: B6Ng01-005G13.b_46_1197

seq1  GAATTCCATAATAATAGCTAATGAATTATTTATAATAGCAAGAAATGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATAATAGCTAATGAATTATTTATAATAGCAAGAAATGAGC  50

seq1  AGAAAAATGCATACCAGACATGAGGAAGAGTGAACTCTGAGCACCGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGCATACCAGACATGAGGAAGAGTGAACTCTGAGCACCGGGCA  100

seq1  CATCTGGCTGGCAAGCATACTTTTACTTTGAAATACTCTGTAAGCAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTGGCAAGCATACTTTTACTTTGAAATACTCTGTAAGCAAAAT  150

seq1  GTGACGTGTTCAAGCTGAATTCGAACTTGAAAGAAAGTAAAAAAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTGTTCAAGCTGAATTCGAACTTGAAAGAAAGTAAAAAAGGAAGA  200

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAGAGA  250

seq1  AAGAGAGAGAGAATGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGAATGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAAAGAAA  300

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGGACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGGACTGTT  350

seq1  TTTCTCACTCTGTCAGGCTAGTATAAGTAAATATTGTTGAGTGAATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTCTGTCAGGCTAGTATAAGTAAATATTGTTGAGTGAATAGCT  400

seq1  TCTAAATTATAGGCTTTAATTTTCACAGTTCTGAGTGTCAAGGCATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTATAGGCTTTAATTTTCACAGTTCTGAGTGTCAAGGCATCCAT  450

seq1  GATTAAGTCAGTGTTAGATGCAAAGGCTGGGGTACCAACTGCCTTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTCAGTGTTAGATGCAAAGGCTGGGGTACCAACTGCCTTTGTGG  500

seq1  TTATTGAATGGTGTCCTCTAGTTCTGTTTTTCATATGATGGAAAATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAATGGTGTCCTCTAGTTCTGTTTTTCATATGATGGAAAATCCAC  550

seq1  ACATCTGAATGATTTTAAGAACATTTAGCCACTAACATTCAGGCTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAATGATTTTAAGAACATTTAGCCACTAACATTCAGGCTTAACT  600

seq1  CCATACTTCTGAGGATTTCGGCATGAGAGTTCTGTCTGGTACATTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTCTGAGGATTTCGGCATGAGAGTTCTGTCTGGTACATTGTGAA  650

seq1  GGCTGAGCTCTGCAGCCAGGGAAGAATGACGTTGGGACAGCAAGGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCTCTGCAGCCAGGGAAGAATGACGTTGGGACAGCAAGGAGATG  700

seq1  GAAGAAAATGTGAGACATCATAGACTGGTGCTTCAGGCTTTATCTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGTGAGACATCATAGACTGGTGCTTCAGGCTTTATCTATTTG  750

seq1  CATGAAGGCACTCACATTTAGACTCAATGACAAATTTATAAAGAATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGCACTCACATTTAGACTCAATGACAAATTTATAAAGAATCACA  800

seq1  CAGGAGCAGCATTTTTCCAGAAATGATTATATAATGGATGACTGAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGCATTTTTCCAGAAATGATTATATAATGGATGACTGAAAAAT  850

seq1  CATATTTACTGTTTATGCAAAGCTACATTG-ATATCTGGTATGCACAATC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATATTTACTGTTTATGCAAAGCTACATTGAATATCTGGTATGCACAATC  900

seq1  TTTAGTTGACTCACTCTAAAAGTCCATACTAGCACCATACTTTATTGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTAGTTGACTCACTCTAAAAGTCCATACTAGCACCATACTTTATTGACT  950

seq1  TTTAAATGTCCTTTATTGCCTTCTATTATCTTTGGGGATATGATTTATCT  999
      ||||||||| ||||| |||| |||||||||||||||||| ||||||||||
seq2  TTTAAATGT-CTTTA-TGCC-TCTATTATCTTTGGGGATTTGATTTATCT  997

seq1  TAATTTGTATATGGTAGT-ACACTGTCAATTAATTTTCTGAAAGTATGAT  1048
       | ||||||||||||||| |||||||||||| |||||||||||| |||||
seq2  AATTTTGTATATGGTAGTAACACTGTCAATT-ATTTTCTGAAAG-ATGAT  1045

seq1  G-ATTGATATTGTTTCAAGTGTAATTTTTATTCTCTTATTTTTATAGAGT  1097
      | |||||||||| ||| |||||||||||||| ||||| |||| ||||| |
seq2  GAATTGATATTG-TTCCAGTGTAATTTTTATCCTCTTCTTTTAATAGAAT  1094

seq1  TG-CATTTTGTCCT-GACAGGTT-TATGTAGAG-TCTTGAGGTAT-AGAC  1142
      || |||| |||||| |||||||| | |||| || |||  ||  || |  |
seq2  TGCCATTCTGTCCTGGACAGGTTATTTGTATAGATCTGTAGAGATGAACC  1144

seq1  CAAGCTGA  1150
      ||||||||
seq2  CAAGCTGA  1152

seq1: chr8_103173624_103174191
seq2: B6Ng01-005G13.g_444_1005 (reverse)

seq1  GCAGGGTAAATATGTATGGCTCCATACTGTATGTATCATCAGAAAGTTGT  50
      |||||| ||||||||  |||||||||||||| | |||||||||||| |||
seq2  GCAGGG-AAATATGTTAGGCTCCATACTGTAAGGATCATCAGAAAGGTGT  49

seq1  TTCAAACACAGACTTACCACAATGAAAAGATGCTTCATTGATCTGAGTAC  100
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TTCAAACACAGACTTACCA-AATG-AAAGATGCTTCATTGATCTGAGTAC  97

seq1  ATAGTAAAATGATTTTAGGAGTCATTTTATGACTATGTTACTTTACTCAC  150
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  ATAGTAAAATGATTTTAAGAGTCA-TTTATGACTATGTTACTTTACTCAC  146

seq1  AAAGTCTTATTTGGTTTTCCTCTAGGTCCTTGGCTTATCTCATCATAGGT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGTC-TATTTGGTTTTCCTCTAGGTCCTTGGCTTATCTCATCATAGG-  194

seq1  TCTCAGCTACCTGCACAGTACCACAAATGTGATGAGTCCATTAACTAAAC  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTACTTGCACAGTACCACAAATGTGATGAGTCCATTAACTAAAC  244

seq1  TGGACCTTAAATATAATTACATGTTGGTTGGTTATTCCCACATATTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTAAATATAATTACATGTTGGTTGGTTATTCCCACATATTTGGT  294

seq1  GCCATGATGGGACAAGCATATCTAGCAGGCATGCAATAATTGAAGGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGGGACAAGCATATCTAGCAGGCATGCAATAATTGAAGGGTGT  344

seq1  CTTATGGCTTTACTGTTATGAAAAGGCACCATGACCAAGGCAACTCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGCTTTACTGTTATGAAAAGGCACCATGACCAAGGCAACTCCTAT  394

seq1  AAAGAACAACATTTAATTGAGGTTGGCTTACAGTTTTAGAGATTCAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAACATTTAATTGAGGTTGGCTTACAGTTTTAGAGATTCAGTCC  444

seq1  ATTATTATCACAGTGGAAGCATGGCACCTTCCAAGCAGGTATGGCATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCACAGTGGAAGCATGGCACCTTCCAAGCAGGTATGGCATTAG  494

seq1  AGAAGGAGCCGAGTGTTCTATATCTTGTTCTGAAGTGATCCAGTCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGCCGAGTGTTCTATATCTTGTTCTGAAGTGATCCAGTCTGATT  544

seq1  TCTCCAGGCAGTCAGGAG  568
      ||||||||||||||||||
seq2  TCTCCAGGCAGTCAGGAG  562