BAC Information

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BAC

Clone NameB6Ng01-005I17
Chromosome8 (Build37)
Map Location 88,240,272 - 88,372,461
singlet/doubletdoublet
Overlap geneItfg1, LOC100040798, Phkb
Upstream geneNfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2
Downstream geneLOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I17.bB6Ng01-005I17.g
ACCDH842652DH842653
length1,073436
definitionDH842652|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I17, 5' end.DH842653|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,371,384 - 88,372,461)(88,240,272 - 88,240,713)
sequence
gaattcctacccacactttgatatgtctttctctctgaaacatttccttg
aggagcccatacctacaactgaggtgagtctttgtgaccctcccttgaaa
agcccacccccacattcagatatgtcttactttctgcctctgcaccaccc
ccaccccagagcccatgtccatgcccttgggtatgtcttcttcccttcct
tgagcccctcccacttctcttaccttcatgcttaaactctatattaaatt
gcctgtaaaaaatcttcaactttcgctttaaactatcaaggcctgaagtt
ctttcctttatcaatgccataaattttagtttagtctgacttaaaaatcc
ctaatagaataaggaaactcctaaatttttgagattgacaccatggaact
gtgtttatgtccccaattcaggactgtaagaactccccagagagaagctg
agggaatggagagaagcttgcctaggagaggggctatgagtgttatatac
aatagaacaggaagagtgagactaacaaaccactcagagtgcagacgatt
ccaacacaaaacagagatattagatctgaggctgcagaattttggtgttt
ccctccttaggggatgcttcactcagattattaatataaacatacaataa
aaattcaaaacattgcaaaaacaatgtccattgaaatatgtaaatgtata
aagcacataatttccagtacaaatgctggatctaaatgaataaatttata
gatgtaaatttattgtgatattatttctaacaaataaattgccatgtact
tctttatagccttgtaaattttggtgagatgaacctatcaaaatgcaaat
atttcaaagtaatagtgaagaaattactgtaaatggttaatacttaagtt
atttatttatttttttttttactttgcttcttgatgtatttgatttttta
aaaaagtttctgtctcgactttcaaatactgagtaattgtaaagctactt
cttagcattctatgtaccctgaaatatgagttaatttagtcatcaaaggg
ttcacttcttattagaaagccaa
actccaatgatcacaagcctgtccccagatctaagagactaataactgtc
cctaagacttctaactggttgctgtgtgacaagtttttttttaatcttgg
ggagttgccttgactgagaggcttcagcaccacaaactgtatctggaccc
tatgcaaaggtgcaaactgaaggtaaaacaaagaaaggaaaggagacaga
caatccacaggtgggatggctaggcaaaatgccatcactctctagggggg
atactcacaaactccatgtgctgtggggttccctcctcctgccactggca
caagggctgagggagaagtggtgagcagggtttgaaccaccagaagaact
ttggagacagcttcagtgagacaagtgtactttattgcttgaggggtagg
gtagatgagggctctaaggggtatgggtggagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88371384_88372461
seq2: B6Ng01-005I17.b_45_1117 (reverse)

seq1  TTGGCTTTCCTACTAAAGAGTGAAACCTTTTGATGACTAAATTTACTCAT  50
      |||||||| ||| |||  |||| |||| ||||||||||||||| ||||| 
seq2  TTGGCTTT-CTAATAAGAAGTG-AACCCTTTGATGACTAAATTAACTCA-  47

seq1  TATTTCAGGGTACATAGAATGCTAAGGAAGTAGCTTTTACATTACTCAGT  100
      ||||||||||||||||||||||||| |||||||||||   ||||||||||
seq2  TATTTCAGGGTACATAGAATGCTAA-GAAGTAGCTTTACAATTACTCAGT  96

seq1  ATTTGAAGGTCGCAGACCAGAAACTTTTTTTAAAAAATCAAATACATCAA  150
      ||||||| |||| ||| ||||||| |||||||||||||||||||||||||
seq2  ATTTGAAAGTCG-AGA-CAGAAAC-TTTTTTAAAAAATCAAATACATCAA  143

seq1  GAAGCAAAGTAAAAAAAAAAATAAATAAATAAACTTAAGTATTAACCATT  200
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GAAGCAAAGTAAAAAAAAAAATAAATAAAT-AACTTAAGTATTAACCA-T  191

seq1  TTACAGTAATTTCTTCACTATTACTTTG-AATATTTGCATTTTGATAGGT  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTACAGTAATTTCTTCACTATTACTTTGAAATATTTGCATTTTGATAGGT  241

seq1  TCATCTCACCAAAATTTACAAGGCTATAAAGAAGTACATGGCAATTTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCACCAAAATTTACAAGGCTATAAAGAAGTACATGGCAATTTATT  291

seq1  TGTTAG-AATAATATCACAATAAATTTACATCTAT-AATTTATTCATTTA  347
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTAGAAATAATATCACAATAAATTTACATCTATAAATTTATTCATTTA  341

seq1  GATCCAGCATTTGTACTGGAAATTATGTGCTTTATACATTTACATATTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCATTTGTACTGGAAATTATGTGCTTTATACATTTACATATTTC  391

seq1  AATGGACATTGTTTTTGCAATGTTTTGAATTTTTATTGTATGTTTATATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACATTGTTTTTGCAATGTTTTGAATTTTTATTGTATGTTTATATT  441

seq1  AATAATCTGAGTGAAGCATCCCCTAAGGAGGGAAACACC-AAATTCTGCA  496
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAATCTGAGTGAAGCATCCCCTAAGGAGGGAAACACCAAAATTCTGCA  491

seq1  GCCTCAGATCTAATATCTCTGTTTTGTGTTGGAATCGTCTGCACTCTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGATCTAATATCTCTGTTTTGTGTTGGAATCGTCTGCACTCTGAG  541

seq1  TGGTTTGTTAGTCTCACTCTTCCTGTTCTATTGTATATAACACTCATAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTTAGTCTCACTCTTCCTGTTCTATTGTATATAACACTCATAGC  591

seq1  CCCTCTCCTAGGCAAGCTTCTCTCCATTCCCTCAGCTTCTCTCTGGGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTAGGCAAGCTTCTCTCCATTCCCTCAGCTTCTCTCTGGGGAG  641

seq1  TTCTTACAGTCCTGAATTGGGGACATAAACACAGTTCCATGGTGTCAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAGTCCTGAATTGGGGACATAAACACAGTTCCATGGTGTCAATC  691

seq1  TCAAAAATTTAGGAGTTTCCTTATTCTATTAGGGATTTTTAAGTCAGACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTTAGGAGTTTCCTTATTCTATTAGGGATTTTTAAGTCAGACT  741

seq1  AAACTAAAATTTATGGCATTGATAAAGGAAAGAACTTCAGGCCTTGATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAATTTATGGCATTGATAAAGGAAAGAACTTCAGGCCTTGATAG  791

seq1  TTTAAAGCGAAAGTTGAAGATTTTTTACAGGCAATTTAATATAGAGTTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCGAAAGTTGAAGATTTTTTACAGGCAATTTAATATAGAGTTTA  841

seq1  AGCATGAAGGTAAGAGAAGTGGGAGGGGCTCAAGGAAGGGAAGAAGACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGGTAAGAGAAGTGGGAGGGGCTCAAGGAAGGGAAGAAGACAT  891

seq1  ACCCAAGGGCATGGACATGGGCTCTGGGGTGGGGGTGGTGCAGAGGCAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGGCATGGACATGGGCTCTGGGGTGGGGGTGGTGCAGAGGCAGA  941

seq1  AAGTAAGACATATCTGAATGTGGGGGTGGGCTTTTCAAGGGAGGGTCACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGACATATCTGAATGTGGGGGTGGGCTTTTCAAGGGAGGGTCACA  991

seq1  AAGACTCACCTCAGTTGTAGGTATGGGCTCCTCAAGGAAATGTTTCAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCACCTCAGTTGTAGGTATGGGCTCCTCAAGGAAATGTTTCAGAG  1041

seq1  AGAAAGACATATCAAAGTGTGGGTAGGAATTC  1078
      ||||||||||||||||||||||||||||||||
seq2  AGAAAGACATATCAAAGTGTGGGTAGGAATTC  1073

seq1: chr8_88240272_88240713
seq2: B6Ng01-005I17.g_66_507

seq1  GAATTCACTCCAATGATCACAAGCCTGTCCCCAGATCTAAGAGACTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAATGATCACAAGCCTGTCCCCAGATCTAAGAGACTAATA  50

seq1  ACTGTCCCTAAGACTTCTAACTGGTTGCTGTGTGACAAGTTTTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTAAGACTTCTAACTGGTTGCTGTGTGACAAGTTTTTTTTTAA  100

seq1  TCTTGGGGAGTTGCCTTGACTGAGAGGCTTCAGCACCACAAACTGTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGAGTTGCCTTGACTGAGAGGCTTCAGCACCACAAACTGTATCT  150

seq1  GGACCCTATGCAAAGGTGCAAACTGAAGGTAAAACAAAGAAAGGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTATGCAAAGGTGCAAACTGAAGGTAAAACAAAGAAAGGAAAGGA  200

seq1  GACAGACAATCCACAGGTGGGATGGCTAGGCAAAATGCCATCACTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAATCCACAGGTGGGATGGCTAGGCAAAATGCCATCACTCTCTA  250

seq1  GGGGGGATACTCACAAACTCCATGTGCTGTGGGGTTCCCTCCTCCTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATACTCACAAACTCCATGTGCTGTGGGGTTCCCTCCTCCTGCCA  300

seq1  CTGGCACAAGGGCTGAGGGAGAAGTGGTGAGCAGGGTTTGAACCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAAGGGCTGAGGGAGAAGTGGTGAGCAGGGTTTGAACCACCAGA  350

seq1  AGAACTTTGGAGACAGCTTCAGTGAGACAAGTGTACTTTATTGCTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGGAGACAGCTTCAGTGAGACAAGTGTACTTTATTGCTTGAGG  400

seq1  GGTAGGGTAGATGAGGGCTCTAAGGGGTATGGGTGGAGAAGG  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTAGATGAGGGCTCTAAGGGGTATGGGTGGAGAAGG  442