BAC Information

Click to search

BAC

Clone NameB6Ng01-005K10
Chromosome8 (Build37)
Map Location 86,630,093 - 86,631,114
singlet/doubletsinglet
Overlap geneLOC100039920
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552
Downstream genePodnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K10.b
ACCDH842729
length1,012
definitionDH842729|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K10, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccggagctatgtagagagaacctgtttcgaaaataa
aagtaaaataaaataaataaacaaaataaaagacctaggaatccaagaca
ggagagactcaatcataaatgctgctttctgacttccagaagcatgccat
aatgtccttgcacgcacgcacacgcatgcacgcacgcacacgcatgcaca
cacacacacacacacacacacacacacacacacacacacacacacacacc
aacagtaacagaaactaaaaagaaagaaaaaaaaccaaaaaggtgttttt
cctcaaacctattatgtgtcatgagagcaacatggcccacagctgacagt
catactttgctttttggttaaggagctatctgccagatcacttctactgc
cctccgtttactttctgttttgtttgctattgatcgactgattgacacag
tctcactacataaccctggtaggcctgggactctctatatagaccaggct
ggcctagaactcacagaccttctgcccctccctagtactggaattaaagg
taggcagcaccacgcatgcccagctcccctcattctataaagacactaat
ttaagtgcccataccagggagcaagtaagcccctcctcctagaggaagga
gtgtctgtagtagaagttctgaagatgaggaggggcaataaatacaggtt
tctccttaaattttccttccccactacaacatcccttgggtggattttgc
ttcctaacagaaatcataaactccaggctcagtgaaagactcaggaggca
gtggatttcctcagagtttgaggccagcctggtcttcatagcaagctctc
agtcacccaaggctattccgttgggggtcttataacccaaaccagaacga
aagcgaatccaaaaccatccaccagcaaccaaaatcgttcctaaattaag
gggagagggaaagaccttttgaactctgtcttttctaacattcatgggaa
aatctttatctg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86630093_86631114
seq2: B6Ng01-005K10.b_32_1043 (reverse)

seq1  CAGAT-GAGATTTTGCCCATGAAAGTGTATGAAAAGACAAGAGGTCAAAA  49
      |||||  ||||||| ||||||||  |||  |||||||| |||| ||||||
seq2  CAGATAAAGATTTT-CCCATGAA--TGTTAGAAAAGAC-AGAGTTCAAAA  46

seq1  ATGGTCTTCTCACTCTCCACCTTAATTTAGGGATGAGTTGTTTGTTTGGT  99
        |||||| || |||||| |||||||||||| | ||        ||||||
seq2  --GGTCTT-TCCCTCTCC-CCTTAATTTAGGAACGA-------TTTTGGT  85

seq1  TG--GTTGGTTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTCTTA  147
      ||  | ||| |||||||||  || | ||| ||| ||| ||||| || | |
seq2  TGCTGGTGGATGGTTTTGG-ATTCGCTTTCGTTCTGG-TTTGGGTTATAA  133

seq1  GGGCCTC-ACTGTATAGCCTTGGCTGACCTGGAGCTTGCTATGTAGACCA  196
      |  || | || | |||||||||| ||||   |||||||||||| ||||||
seq2  GACCCCCAACGGAATAGCCTTGGGTGACTGAGAGCTTGCTATGAAGACCA  183

seq1  GGCTGGCCTCAAACTCAGAGGAAA-CCACTGCCTCCTGAGTCTTTCACTG  245
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  GGCTGGCCTCAAACTCTGAGGAAATCCACTGCCTCCTGAGTCTTTCACTG  233

seq1  AGCCTGGAGTTTGTGATTTCTGTTAAGAAGCAAGATCCACCCAA-GGCTG  294
      |||||||||||| |||||||||||| ||||||| |||||||||| || ||
seq2  AGCCTGGAGTTTATGATTTCTGTTAGGAAGCAAAATCCACCCAAGGGATG  283

seq1  CTGTAGTGGGGAAGGAAACTTTAAGGAGAAACCTGT-TTTACTGCCCCTC  343
       ||||||||||||||||| ||||||||||||||||| |||| ||||||||
seq2  TTGTAGTGGGGAAGGAAAATTTAAGGAGAAACCTGTATTTATTGCCCCTC  333

seq1  CTCATCTTCAGAACTTCTACTACAGACACTCCTTCCTCTAGGAGGAGGGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTCAGAACTTCTACTACAGACACTCCTTCCTCTAGGAGGAGGGG  383

seq1  CTTACTTGCTCCCTGGTATGGGCACTTAAATTAGTGTCTTTATAGAATGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGCTCCCTGGTATGGGCACTTAAATTAGTGTCTTTATAGAATGA  433

seq1  GGGGAGCTGGGCATGCGTGGTGCTGCCTACCTTTAATTCCAGTACTAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTGGGCATGCGTGGTGCTGCCTACCTTTAATTCCAGTACTAGGG  483

seq1  AGGGGCAGAAGGTCTGTGAGTTCTAGGCCAGCCTGGTCTATATAGAGAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGAAGGTCTGTGAGTTCTAGGCCAGCCTGGTCTATATAGAGAGT  533

seq1  CCCAGGCCTACCAGGGTTATGTAGTGAGACTGTGTCAATCAGTCGATCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCTACCAGGGTTATGTAGTGAGACTGTGTCAATCAGTCGATCAA  583

seq1  TAGCAAACAAAACAGAAAGTAAACGGAGGGCAGTAGAAGTGATCTGGCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACAAAACAGAAAGTAAACGGAGGGCAGTAGAAGTGATCTGGCAG  633

seq1  ATAGCTCCTTAACCAAAAAGCAAAGTATGACTGTCAGCTGTGGGCCATGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCTTAACCAAAAAGCAAAGTATGACTGTCAGCTGTGGGCCATGT  683

seq1  TGCTCTCATGACACATAATAGGTCTGAGGAAAAACACCTTTTTGGTTTTT  743
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTCTCATGACACATAATAGGTTTGAGGAAAAACACCTTTTTGGTTTTT  733

seq1  TTTCTTTCTTTTTAGTTTCTGTTACTGTTGGTGTGTGTGTGTGTGTGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTAGTTTCTGTTACTGTTGGTGTGTGTGTGTGTGTGTGT  783

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGTGCGTGCGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGTGCGTGCGT  833

seq1  GCATGCGTGTGCGTGCGTGCAAGGACATTATGGCATGCTTCTGGAAGTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGTGTGCGTGCGTGCAAGGACATTATGGCATGCTTCTGGAAGTCA  883

seq1  GAAAGCAGCATTTATGATTGAGTCTCTCCTGTCTTGGATTCCTAGGTCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCATTTATGATTGAGTCTCTCCTGTCTTGGATTCCTAGGTCTT  933

seq1  TTATTTTGTTTATTTATTTTATTTTACTTTTATTTTCGAAACAGGTTCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTATTTATTTTATTTTACTTTTATTTTCGAAACAGGTTCTC  983

seq1  TCTACATAGCTCCGGCTGTCCTGGAATTC  1022
      |||||||||||||||||||||||||||||
seq2  TCTACATAGCTCCGGCTGTCCTGGAATTC  1012