BAC Information

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BAC

Clone NameB6Ng01-005L12
Chromosome8 (Build37)
Map Location 85,682,878 - 85,849,065
singlet/doubletdoublet
Overlap geneLOC100039688, Tbc1d9, Ucp1, Elmod2
Upstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
Downstream gene4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L12.bB6Ng01-005L12.g
ACCDH842780DH842781
length1,2191,116
definitionDH842780|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L12, 5' end.DH842781|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,682,878 - 85,684,126)(85,847,922 - 85,849,065)
sequence
gaattcattgttctcatttcccttctgttgctgtgataaacactaacacc
aaaagcaacttgtggaggaaagggttaatttcatctcacgcttcccagtt
aactgttcaacagtgagaaagtcagtgcagaactcactcaggaactcaag
catgaaggacagctgcttcctatctggcttcctgttcatgctcaggaagt
cctaaagtttttcatacacagcccagaccgcctgcctagggatgtcccca
cccacagtgggcaaggccctcccacatcaaccatcaagagagacaatctc
ttatatacatgaccaaaggccaacccaatctgggcaattctttagtcgag
ggtctctcttccaaagtatattttggctgacaataaaagctgagacactc
agaggaactgcaactagggtttgttgtggttaaaattatgctgggatttg
ctataccccttgttgtctttaaaaatcaattaggggtttctacccccctt
caaatgattgttttctgtgataaaggacacaggaacctttagatttataa
taagctgggcagatatcaaccctctattctatttttttctatttctgtat
ggtgatgctcgagatatagcttgccatgttctgcctgggccactcctagt
ccatcaggccaaacctcatggccatgtgctcacaatccaccttccccagg
gcaacttccttccttcttcctttctcttccttctatcccaacctcaaacc
tcaagttcaggagcctttgctctgacccctcttttttgcccagcccagac
tgtaggcatctttattaaccagtcagggataacttgaggggcaagtttta
caaagcaccatttggtgtcttgtgagaattcacttgtcttagtcttaagg
caacctagtctcaggatacagtatttagcattcgaatacacagcaacacc
aaacccaccccctacaagggtttctaagtctttcttctcccaacccagga
aacaagtgagcttagagtccaatagttatgtaaatacatctttgttggcc
actaaagctttacaaatgctacgcctggggaaactgttccctatctgctt
ttgatgccaagtacctaagttgaggtagaacgtccttactctgttgtgca
taagattatcaccttctttcaattatgactggctctttatgcaaataatt
atcgaaaatgctctcgttc
gaattctgcgagaaagccaagattcccagtcttaggaaaggtagaacata
aggccccagagcctgggtcacaggttctgtgagcagcttcatcctgggaa
accctgtagtttctgtgaagtgggaaaagtttgtggaaagcagtttgtca
actaatatgaaaataaaagaatctaggttgccatatattcaagaaaagaa
ataaaatctccaatttaaaatattgtaaaactctgtagcattggcctatt
tagttctcttttaatagatgtttgggcccttgtgcttttgagtgtttgcc
tgtatgcactgtgtctgtgctgtgtacatacctgctgcccacagaggtaa
gaagagggcatcagattctctggagctggattgtcaggtggttgtgagcc
atcaggtaggtcctggaaaccaaacccagtcctctgcagaagtagtgttc
tttgccattgagcctctctctagccttgcttaattcttaccaaacattta
tggaagaagaaacagtgccactgttaacagaaagtcctgggaaatggagg
gaagacccccccccttttgagtgcacactaaaaccaaagacctataaata
aaaaatacaactcggtgtcctttatgaacgtgatgcaagagttcttacag
aacatgagctgagtgatcatagaaacacataaaaggacactgttaggatt
aaagtttaagttcagggacttcatctattaccacggtaacagagtcgaca
ggtactgaaaaatcggctcatgattaaaatctatcccacaatccattaaa
ggtcgccagcggacaatctagctgacatcacagaagacattaactttgaa
ggtttagtcacttgtagttggaagcatgacagatatgattagtttctctg
cttctatcagcattttactgaaatcttgggaccacagtcagcaagaaaac
aaaacaaaacaaaactgaagacatagtgccagaagagctacatgtataac
agagatgtagtctgagatgtagacgtgctggtcctgagccactgcctttg
tttataagtgactgaaatgcagcagttgctcactttgtctgtattagcag
gccttttgatcatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_85682878_85684126
seq2: B6Ng01-005L12.b_49_1267

seq1  GAATTCATTGTTCTCATTTCCCTTCTGTTGCTGTGATAAACACTAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTCTCATTTCCCTTCTGTTGCTGTGATAAACACTAACACC  50

seq1  AAAAGCAACTTGTGGAGGAAAGGGTTAATTTCATCTCACGCTTCCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTTGTGGAGGAAAGGGTTAATTTCATCTCACGCTTCCCAGTT  100

seq1  AACTGTTCAACAGTGAGAAAGTCAGTGCAGAACTCACTCAGGAACTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCAACAGTGAGAAAGTCAGTGCAGAACTCACTCAGGAACTCAAG  150

seq1  CATGAAGGACAGCTGCTTCCTATCTGGCTTCCTGTTCATGCTCAGGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGACAGCTGCTTCCTATCTGGCTTCCTGTTCATGCTCAGGAAGT  200

seq1  CCTAAAGTTTTTCATACACAGCCCAGACCGCCTGCCTAGGGATGTCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTTTTTCATACACAGCCCAGACCGCCTGCCTAGGGATGTCCCCA  250

seq1  CCCACAGTGGGCAAGGCCCTCCCACATCAACCATCAAGAGAGACAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGGGCAAGGCCCTCCCACATCAACCATCAAGAGAGACAATCTC  300

seq1  TTATATACATGACCAAAGGCCAACCCAATCTGGGCAATTCTTTAGTCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATGACCAAAGGCCAACCCAATCTGGGCAATTCTTTAGTCGAG  350

seq1  GGTCTCTCTTCCAAAGTATATTTTGGCTGACAATAAAAGCTGAGACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTTCCAAAGTATATTTTGGCTGACAATAAAAGCTGAGACACTC  400

seq1  AGAGGAACTGCAACTAGGGTTTGTTGTGGTTAAAATTATGCTGGGATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTGCAACTAGGGTTTGTTGTGGTTAAAATTATGCTGGGATTTG  450

seq1  CTATACCCCTTGTTGTCTTTAAAAATCAATTAGGGGTTTCTACCCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCCTTGTTGTCTTTAAAAATCAATTAGGGGTTTCTACCCCCCTT  500

seq1  CAAATGATTGTTTTCTGTGATAAAGGACACAGGAACCTTTAGATTTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATTGTTTTCTGTGATAAAGGACACAGGAACCTTTAGATTTATAA  550

seq1  TAAGCTGGGCAGATATCAACCCTCTATTCTATTTTTTTCTATTTCTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGGCAGATATCAACCCTCTATTCTATTTTTTTCTATTTCTGTAT  600

seq1  GGTGATGCTCGAGATATAGCTTGCCATGTTCTGCCTGGGCCACTCCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCTCGAGATATAGCTTGCCATGTTCTGCCTGGGCCACTCCTAGT  650

seq1  CCATCAGGCCAAACCTCATGGCCATGTGCTCACAATCCACCTTCCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGCCAAACCTCATGGCCATGTGCTCACAATCCACCTTCCCCAGG  700

seq1  GCAACTTCCTTCCTTCTTCCTTTCTCTTCCTTCTATCCCAACCTCAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCCTTCCTTCTTCCTTTCTCTTCCTTCTATCCCAACCTCAAACC  750

seq1  TCAAGTTCAGGAGCCTTTGCTCTGACCCCTCTTTTTTGCCCAGCCCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCAGGAGCCTTTGCTCTGACCCCTCTTTTTTGCCCAGCCCAGAC  800

seq1  TGTAGGCATCTTTATTAACCAGTCAGGGATAACTTGAGGGGCAAGTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCATCTTTATTAACCAGTCAGGGATAACTTGAGGGGCAAGTTTTA  850

seq1  CAAAGCACCATTTGGTGTC-TGTGAGAATTCACTTGTCTTAGTCTTAAGG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAAGCACCATTTGGTGTCTTGTGAGAATTCACTTGTCTTAGTCTTAAGG  900

seq1  CAACCTAGTCTCAGGATACAGTATTTAGCATTCGAATACACAGCAACACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGTCTCAGGATACAGTATTTAGCATTCGAATACACAGCAACACC  950

seq1  AAACCCACCCCCTACAAGGGTTTCCTAAGGTCTTTCTTCTCCCAAAACCC  999
      ||||||||||||||||||||||| |||| ||||||||||||||  |||||
seq2  AAACCCACCCCCTACAAGGGTTT-CTAA-GTCTTTCTTCTCCC--AACCC  996

seq1  AGGAAACAAGTTGAAGCTTAGAAGTCCAATAGTTATGTAAATACATCTTT  1049
      |||||||||||   ||||||| ||||||||||||||||||||||||||||
seq2  AGGAAACAAGT--GAGCTTAG-AGTCCAATAGTTATGTAAATACATCTTT  1043

seq1  GTTGGCCACCTAAAAGCTTACAAATGCTACGCCTGGGGAAACTGTTCCCT  1099
      |||||||| |||||   |||||||||||||||||||||||||||||||||
seq2  GTTGGCCA-CTAAAGCTTTACAAATGCTACGCCTGGGGAAACTGTTCCCT  1092

seq1  ATCTGCTTTTGGAATGCCCACAGTACTTAGTTTGAGGTAGACTGTTCCCT  1149
      |||||||||||  |||||   ||||| ||  ||||||||||  ||  |||
seq2  ATCTGCTTTTG--ATGCC--AAGTACCTAAGTTGAGGTAGAACGT--CCT  1136

seq1  TACTCTGTTGTGGCATAAAGATATCACCTTCTCTTTCCCAAACATTAATG  1199
      ||||||||||| ||||||   ||||||||||| |        || | |||
seq2  TACTCTGTTGT-GCATAAGATTATCACCTTCTTT--------CAATTATG  1177

seq1  ACTTGCTCTCTTTAATGACAAATAATTAATCAGAAAATGCATCTCTGTTC  1249
      ||| ||||   || ||| ||||||||| ||| |||||||| |||| ||||
seq2  ACTGGCTC---TTTATG-CAAATAATT-ATC-GAAAATGC-TCTC-GTTC  1219

seq1: chr8_85847922_85849065
seq2: B6Ng01-005L12.g_72_1187 (reverse)

seq1  TTGATGATCCAAAAGTGCACTGCTAATACAGACAGAAGTGAGCAACCTGC  50
      |||||||| |||||| || ||||||||||||||| |||||||||| ||||
seq2  TTGATGAT-CAAAAG-GC-CTGCTAATACAGACA-AAGTGAGCAA-CTGC  45

seq1  TGCCAAATATTTCAGTCCACTTATTAATACATAGCAGTGGCCTCCAGGGA  100
      |||     |||||||| ||||||| || | |  ||||||||   ||||  
seq2  TGC-----ATTTCAGT-CACTTATAAACA-AAGGCAGTGGC--TCAGG--  84

seq1  CCCAGCACTGTCTACATCCTCAGACTACATCTCTGTTAATACATGTAGCT  150
       ||||||| |||||||| ||||||||||||||||||| ||||||||||||
seq2  ACCAGCAC-GTCTACAT-CTCAGACTACATCTCTGTT-ATACATGTAGCT  131

seq1  CTTTCTGGCCAACTATGTCTCAGGTTTTGTTTTTGTTTTGTTTTTCCTTG  200
      | |||||||  |||||||||   |||||| ||||||||||||||  ||||
seq2  C-TTCTGGC--ACTATGTCTTCAGTTTTG-TTTTGTTTTGTTTT--CTTG  175

seq1  CTGACTGTGGTCCCCAAGATTTCAGTAAAATGCTGAATAGAAGCAGAGAA  250
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CTGACTGTGGT-CCCAAGATTTCAGTAAAATGCTG-ATAGAAGCAGAGAA  223

seq1  ACTAATCATATCTGTCATGCTTCCAACTACAAGTGACTAAACCTTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCATATCTGTCATGCTTCCAACTACAAGTGACTAAACCTTCAAAG  273

seq1  TTTAATGTCTTCTGTGATGTCAGCTAGATTGTCCGCTGGCGACCTTTAAT  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTAATGTCTTCTGTGATGTCAGCTAGATTGTCCGCTGGCGACCTTTAAT  322

seq1  GGATTGTGGGATAGATTTTAATCATGAGCCGATTTTTCAGTACCTGTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGGGATAGATTTTAATCATGAGCCGATTTTTCAGTACCTGTCGA  372

seq1  CTCTGTTACCGTGGTAATAGATGAAGTCCCTGAACTTAAACTTTAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTACCGTGGTAATAGATGAAGTCCCTGAACTTAAACTTTAATCCT  422

seq1  AACAGTGTCCTTTTATGTGTTTCTATGATCACTCAGCTCATGTTCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTCCTTTTATGTGTTTCTATGATCACTCAGCTCATGTTCTGTAA  472

seq1  GAACTCTTGCATCACGTTCATAAAGGACACCGAGTTGTATTTTTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTGCATCACGTTCATAAAGGACACCGAGTTGTATTTTTTATTTA  522

seq1  TAGGTCTTTGGTTTTAGTGTGCACTCAAAAGGGGGGGGGTCTTCCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTGGTTTTAGTGTGCACTCAAAAGGGGGGGGGTCTTCCCTCCA  572

seq1  TTTCCCAGGACTTTCTGTTAACAGTGGCACTGTTTCTTCTTCCATAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGACTTTCTGTTAACAGTGGCACTGTTTCTTCTTCCATAAATG  622

seq1  TTTGGTAAGAATTAAGCAAGGCTAGAGAGAGGCTCAATGGCAAAGAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAGAATTAAGCAAGGCTAGAGAGAGGCTCAATGGCAAAGAACAC  672

seq1  TACTTCTGCAGAGGACTGGGTTTGGTTTCCAGGACCTACCTGATGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGCAGAGGACTGGGTTTGGTTTCCAGGACCTACCTGATGGCTCA  722

seq1  CAACCACCTGACAATCCAGCTCCAGAGAATCTGATGCCCTCTTCTTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCTGACAATCCAGCTCCAGAGAATCTGATGCCCTCTTCTTACCT  772

seq1  CTGTGGGCAGCAGGTATGTACACAGCACAGACACAGTGCATACAGGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCAGCAGGTATGTACACAGCACAGACACAGTGCATACAGGCAAA  822

seq1  CACTCAAAAGCACAAGGGCCCAAACATCTATTAAAAGAGAACTAAATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAAAGCACAAGGGCCCAAACATCTATTAAAAGAGAACTAAATAGG  872

seq1  CCAATGCTACAGAGTTTTACAATATTTTAAATTGGAGATTTTATTTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTACAGAGTTTTACAATATTTTAAATTGGAGATTTTATTTCTTT  922

seq1  TCTTGAATATATGGCAACCTAGATTCTTTTATTTTCATATTAGTTGACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATATATGGCAACCTAGATTCTTTTATTTTCATATTAGTTGACAA  972

seq1  ACTGCTTTCCACAAACTTTTCCCACTTCACAGAAACTACAGGGTTTCCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTCCACAAACTTTTCCCACTTCACAGAAACTACAGGGTTTCCCA  1022

seq1  GGATGAAGCTGCTCACAGAACCTGTGACCCAGGCTCTGGGGCCTTATGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGCTGCTCACAGAACCTGTGACCCAGGCTCTGGGGCCTTATGTT  1072

seq1  CTACCTTTCCTAAGACTGGGAATCTTGGCTTTCTCGCAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTCCTAAGACTGGGAATCTTGGCTTTCTCGCAGAATTC  1116