BAC Information

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BAC

Clone NameB6Ng01-005P02
Chromosome8 (Build37)4 (Build37)
Map Location 109,471,386 - 109,471,44418,757,453 - 18,758,603
singlet/doubletsingletsinglet
Overlap geneSntb2
Upstream geneSlc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703
Downstream geneVps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P02.bB6Ng01-005P02.g
ACCDH842939DH842940
length5991,112
definitionDH842939|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P02, 5' end.DH842940|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,471,386 - 109,471,444)(18,757,453 - 18,758,603)
sequence
gaattccactttgggcctgtctctggaccttcttttcctcaggctgctct
ccaatttcatactagaagatctttacacaggaacaattatgggtcggagt
tttgactgtaggatgtcaaacccatccttcatttgatgacctgtctttct
gctggaggtggactatataagtttcctctccccaatgtagggtattttat
ataaggtcactcctattgagtccagagaatctctcatctctcaggtctct
ggtacactttggagggacccccaatctccaacctctaaaagttacctgtt
tccattctttctgctgacccccagggcttcagtctttttctcctacccaa
taccagaagatgttaccctgtccttccatcccctttcccgcttgtgtccc
tttatccctgccttctttagattgctttcttctccctcccaagtaggact
atagcactctcagtcaggcccctccattttgttgttgttttttttttttt
gagttccgtggatggtgatggtatcttaggtattctgttttgtgtgtgtg
tgtttttattgttgtttgtttgtttgattgattgatttttgtttgtttg
gaattcctatattctgtttccagtgagcaagtgaaatagcaaatgtctca
cagtcgctttaacacaggaatactctgttattagtggctcagctatcata
atcatctttgccagagaatcctgaactttagaatggtgtctattttctct
atttattcatgtgaacttcctactaactttgggcatttgttctgataaag
aacagattgacttatatccaggataaaaggacaaaaccatttctgttttg
tgtcatagaacagttattgctaaatagagggaaaacaattttcacttaga
aagtaaatgaatgattctctctcaagttgcacttgctgcacctaatatgt
tcaatcattgttagaaaaaggagagtgaagagatataataatgtttattc
agggggctgagaaatgcctcagtagttaagagcacattttgaacttgtag
agtacctgagtctaccatgtagcacccatgttaggcatcttacaaatgcc
tgtaagttttgctccatgggacttattagcttcttctagactacagaggc
atttacacatgtacaatgtttttccacatagatatgcacatatatgcata
attaaatataaatgaataaaataaattcagctttttgtttgagagatttg
agacttgatctaaaacactcaaaaactcaatgtctcttagtcccatatta
tcaatttatggaactatatttaattaactggttcctatttcttacttaaa
gatagtttatggaagattgttggaaagcattaacattattgtcatcataa
cagttgaatggttcttagtggtatcttcctgaaggaagctctagaagtct
atggaatgcagctatttcctttgagtttcaatagcagagatttttatatt
tgcttgtcaatattcattaatggtgtactactgtctaaatagaataaaaa
ttttattatctttgatttatgagtactactttgtaatactacatagggac
attaaaatgatcatgaaatatgacttatgatggatacagaagagtcatac
actatcatatagcagctcaatgaggccatgcttaatttcatcttgtttgt
atcgctagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109471386_109471444
seq2: B6Ng01-005P02.b_584_644

seq1  TTTTGTGTGTGTGTGTTGGGGGGGGTTGTTTGTTTGTTTG---GGTAGGT  47
      |||||||||||||||||       ||||||||||||||||   | | | |
seq2  TTTTGTGTGTGTGTGTT-TTTATTGTTGTTTGTTTGTTTGATTGATTGAT  49

seq1  TTTGTTTTGTTT  59
      |||  |||||||
seq2  TTTTGTTTGTTT  61

seq1: chr4_18757453_18758603
seq2: B6Ng01-005P02.g_68_1179 (reverse)

seq1  CATGCTAGCAGTATACAAAACAAGATGAAAATTAAGCATGGCCTTCATTG  50
      |||||||||   |||| |||||||||| ||||||||||||||| ||||||
seq2  CATGCTAGC--GATAC-AAACAAGATG-AAATTAAGCATGGCC-TCATTG  45

seq1  AGCTGCTATATTGGAATATGTTTGTTTATGACCTCTCTCTTGTTTATTCT  100
      |||||||        ||||| | || |||||     ||||| | || || 
seq2  AGCTGCT--------ATATGATAGTGTATGA-----CTCTTCTGTA-TCC  81

seq1  ATCCATAAGTCATATTTTCCATGAATCAATTTTTAAATTGTCCCTATTGT  150
      || ||||||||||||||  |||| ||||  ||||||  |||||||| |||
seq2  AT-CATAAGTCATATTT--CATG-ATCA--TTTTAA--TGTCCCTA-TGT  122

seq1  AGGTATTTACCAAAGTAAGTACTTCATAAAATCAAAGATTAATAAAATTT  200
      | |||||   |||||| ||||| |||| |||||||||| |||||||||||
seq2  A-GTATT--ACAAAGT-AGTAC-TCAT-AAATCAAAGA-TAATAAAATTT  165

seq1  TTATTCTTATTTTAGACAGTAGTACACCATTAATGAATTATTGACAAGCA  250
      |||||||   ||||||||||||||||||||||||||| ||||||||||||
seq2  TTATTCT--ATTTAGACAGTAGTACACCATTAATGAA-TATTGACAAGCA  212

seq1  AATATAAAAAATCTCTGCTATTGAAACTCAAAGGAAATAGCTGCATTCCA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAT-AAAAATCTCTGCTATTGAAACTCAAAGGAAATAGCTGCATTCCA  261

seq1  TAGACTTCTAGAGCTTCCTTCAGGAAGATACCACTAAGAACCATTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCTAGAGCTTCCTTCAGGAAGATACCACTAAGAACCATTCAACT  311

seq1  GTTATGATGACAATAATGTTAATGCTTTCCAACAATCTTCCATAAACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATGACAATAATGTTAATGCTTTCCAACAATCTTCCATAAACTAT  361

seq1  CTTTAAGTAAGAAATAGGAACCAGTTAATTAAATATAGTTCCATAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTAAGAAATAGGAACCAGTTAATTAAATATAGTTCCATAAATTG  411

seq1  ATAATATGGGACTAAGAGACATTGAGTTTTTGAGTGTTTTAGATCAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGGGACTAAGAGACATTGAGTTTTTGAGTGTTTTAGATCAAGTC  461

seq1  TCAAATCTCTCAAACAAAAAGCTGAATTTATTTTATTCATTTATATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTCTCAAACAAAAAGCTGAATTTATTTTATTCATTTATATTTAA  511

seq1  TTATGCATATATGTGCATATCTATGTGGAAAAACATTGTACATGTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATATATGTGCATATCTATGTGGAAAAACATTGTACATGTGTAAA  561

seq1  TGCCTCTGTAGTCTAGAAGAAGCTAATAAGTCCCATGGAGCAAAACTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTAGTCTAGAAGAAGCTAATAAGTCCCATGGAGCAAAACTTAC  611

seq1  AGGCATTTGTAAGATGCCTAACATGGGTGCTACATGGTAGACTCAGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTGTAAGATGCCTAACATGGGTGCTACATGGTAGACTCAGGTAC  661

seq1  TCTACAAGTTCAAAATGTGCTCTTAACTACTGAGGCATTTCTCAGCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGTTCAAAATGTGCTCTTAACTACTGAGGCATTTCTCAGCCCCC  711

seq1  TGAATAAACATTATTATATCTCTTCACTCTCCTTTTTCTAACAATGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAACATTATTATATCTCTTCACTCTCCTTTTTCTAACAATGATTG  761

seq1  AACATATTAGGTGCAGCAAGTGCAACTTGAGAGAGAATCATTCATTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTAGGTGCAGCAAGTGCAACTTGAGAGAGAATCATTCATTTACT  811

seq1  TTCTAAGTGAAAATTGTTTTCCCTCTATTTAGCAATAACTGTTCTATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTGAAAATTGTTTTCCCTCTATTTAGCAATAACTGTTCTATGAC  861

seq1  ACAAAACAGAAATGGTTTTGTCCTTTTATCCTGGATATAAGTCAATCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAAATGGTTTTGTCCTTTTATCCTGGATATAAGTCAATCTGT  911

seq1  TCTTTATCAGAACAAATGCCCAAAGTTAGTAGGAAGTTCACATGAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCAGAACAAATGCCCAAAGTTAGTAGGAAGTTCACATGAATAAA  961

seq1  TAGAGAAAATAGACACCATTCTAAAGTTCAGGATTCTCTGGCAAAGATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAATAGACACCATTCTAAAGTTCAGGATTCTCTGGCAAAGATGA  1011

seq1  TTATGATAGCTGAGCCACTAATAACAGAGTATTCCTGTGTTAAAGCGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATAGCTGAGCCACTAATAACAGAGTATTCCTGTGTTAAAGCGACT  1061

seq1  GTGAGACATTTGCTATTTCACTTGCTCACTGGAAACAGAATATAGGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACATTTGCTATTTCACTTGCTCACTGGAAACAGAATATAGGAATT  1111

seq1  C  1151
      |
seq2  C  1112