BAC Information

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BAC

Clone NameB6Ng01-006I22
Chromosome8 (Build37)15 (Build37)
Map Location 19,869,054 - 19,870,22888,964,731 - 88,964,860
singlet/doubletsingletsinglet
Overlap geneLOC547150
Upstream geneAgpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567
Downstream geneLOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I22.bB6Ng01-006I22.g
ACCDH843382DH843383
length1,168834
definitionDH843382|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I22, 5' end.DH843383|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,869,054 - 19,870,228)(88,964,731 - 88,964,860)
sequence
gaattcatgtaaaagttgcaaattgtatgaaaacctttcaagagtacaga
acatattaagtaggaaggaaaagtgtaatactgctgcagaagaacaatgt
tataggactgtagtgttcactcttgttgacaatcaaattagtgtaaatga
agcgaaacattgttttagtttctgttgtatactgactcactttactggtc
tgctctttatcttacagcatcctttgggaacctatgctcacagcaggaga
ttgggaatgtgctggatcttctagtagggtgaacatttacagttactcct
gacacttcttagtttacccagtggtcttccaaggatgttttaaaggctaa
cactactttgtaacaaccttcgatccttttaatatggatccacaagtcaa
ggcatttccaattcataaatttaattttaaatatttgtaattatcatctt
agacactaataaatgtgtattattccattcatccatatgcacagaacata
cataggccatctcgtactaactgccaagtggccctttagttccgttttaa
tttaaggaattttaaagccaaagcagttaaatgacgaggcatagactcct
tgtttaaaataagtcgtgacttacaaagatgatgtaatcaaccatacctg
tttgggcctccactgagaagtagggttgtccttcaaggatgctatacact
aacttggcactttttccataggtgggattatctgcatcagaggctgtcac
ttggataactgatgttcctgaataaaggggggtcagggggagcaattagc
aacatccaataaactttgcaaatttcattgctgtttacagaatttcattt
aaaatgaagacctgtaaggcagctcacaatgactctacatgattttattg
tcctatagttcaagtgcagaccactcctctccctgccaatcttccctctc
tagtttccttcttctatttcttttttatcagcaaggtcaaactaaggttt
aaaaggaaactttctactttccacggtcttcctggctggtttgctattaa
ataatatgaacattcttgtccaaatactccctagaacactgtgaattcac
tgtttagtaattccactaatcagtaaaattctctctgagagtgcataatg
aataatgaagaatggctt
gaattctttgtttagctctgtaccccatttttaatagggttatttggttc
tccagagtcttaacttcttgagttctttgtgtatattggatattagccct
ctatccgatgtaggattggtaagtatcttttaccaatcagttggttgcca
ttttgtcctattgacagtgtcctttgccttacagaagctttgtaattttg
aggtcccatgtgccaattcttgatcttagagcaaaagctaatggtgttct
gttcaggaaaatttcccctgtgcccatgtgctccaggctctttcccacct
tcttttctattagtttcagtgtatctggttttatgtggaggtctttgatc
catgtggactttagctttatacaaggacacaagaatggatcaattcgcat
tcttctgcatgctaacctcaagttgaaccatcaccatttgttgaaaatgt
tgtctttttccactggaaggttttagctcctttttcaaggatcaaatgac
catagttcatttctgggtcttcaattctatttcattcatctacctgtctg
tcactgtaacaatgctatgcagttttgttttgtttttttttaatcactat
tgttctgtagtacagcttgaggtctgggatggtgctttccccagaagttc
ttttattgttgagaataattttcaccattctgggccttttgttattccag
aggaatttgagaattgcttgcttgcttgatcgctttctttctttctctct
tctttcttctttcttctttctttctttcttctttctttcttcttcttcct
ttcttccttccttccttccttcttccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19869054_19870228
seq2: B6Ng01-006I22.b_41_1208

seq1  GAATTCATGTAAAAGTTGCAAATTGTATGAAAACCTTTCAAGAGTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAAAAGTTGCAAATTGTATGAAAACCTTTCAAGAGTACAGA  50

seq1  ACATATTAAGTAGGAAGGAAAAGTGTAATACTGCTGCAGAAGAACAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTAAGTAGGAAGGAAAAGTGTAATACTGCTGCAGAAGAACAATGT  100

seq1  TATAGGACTGTAGTGTTCACTCTTGTTGACAATCAAATTAGTGTAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGACTGTAGTGTTCACTCTTGTTGACAATCAAATTAGTGTAAATGA  150

seq1  AGCGAAACATTGTTTTAGTTTCTGTTGTATACTGACTCACTTTACTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAACATTGTTTTAGTTTCTGTTGTATACTGACTCACTTTACTGGTC  200

seq1  TGCTCTTTATCTTACAGCATCCTTTGGGAACCTATGCTCACAGCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTATCTTACAGCATCCTTTGGGAACCTATGCTCACAGCAGGAGA  250

seq1  TTGGGAATGTGCTGGATCTTCTAGTAGGGTGAACATTTACAGTTACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATGTGCTGGATCTTCTAGTAGGGTGAACATTTACAGTTACTCCT  300

seq1  GACACTTCTTAGTTTACCCAGTGGTCTTCCAAGGATGTTTTAAAGGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTTAGTTTACCCAGTGGTCTTCCAAGGATGTTTTAAAGGCTAA  350

seq1  CACTACTTTGTAACAACCTTCGATCCTTTTAATATGGATCCACAAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTTGTAACAACCTTCGATCCTTTTAATATGGATCCACAAGTCAA  400

seq1  GGCATTTCCAATTCATAAATTTAATTTTAAATATTTGTAATTATCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCCAATTCATAAATTTAATTTTAAATATTTGTAATTATCATCTT  450

seq1  AGACACTAATAAATGTGTATTATTCCATTCATCCATATGCACAGAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAATAAATGTGTATTATTCCATTCATCCATATGCACAGAACATA  500

seq1  CATAGGCCATCTCGTACTAACTGCCAAGTGGCCCTTTAGTTCCGTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCATCTCGTACTAACTGCCAAGTGGCCCTTTAGTTCCGTTTTAA  550

seq1  TTTAAGGAATTTTAAAGCCAAAGCAGTTAAATGACGAGGCATAGACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAATTTTAAAGCCAAAGCAGTTAAATGACGAGGCATAGACTCCT  600

seq1  TGTTTAAAATAAGTCGTGACTTACAAAGATGATGTAATCAACCATACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATAAGTCGTGACTTACAAAGATGATGTAATCAACCATACCTG  650

seq1  TTTGGGCCTCCACTGAGAAGTAGGGTTGTCCTTCAAGGATGCTATACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCCTCCACTGAGAAGTAGGGTTGTCCTTCAAGGATGCTATACACT  700

seq1  AACTTGGCACTTTTTCCATAGGTGGGATTATCTGCATCAGAGGCTGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCACTTTTTCCATAGGTGGGATTATCTGCATCAGAGGCTGTCAC  750

seq1  TTGGATAACTGATGTTCCTGAATAAAGGGGGGTCAGGGGGAGCAATTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAACTGATGTTCCTGAATAAAGGGGGGTCAGGGGGAGCAATTAGC  800

seq1  AACATCCAATAAACTTTGCAAATTTCATTGCTGTTTACAGAATTTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAATAAACTTTGCAAATTTCATTGCTGTTTACAGAATTTCATTT  850

seq1  AAAATGAAGACCTGTAAGGAAGCTCACAATGACTCTACATGATCTTATTG  900
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AAAATGAAGACCTGTAAGGCAGCTCACAATGACTCTACATGATTTTATTG  900

seq1  TCCTATAGTTCAAGTGCAGACCACTCCTCTCCCTGCCAATCTTCCCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAGTTCAAGTGCAGACCACTCCTCTCCCTGCCAATCTTCCCTCTC  950

seq1  TAGTTTCCTTCTTCTATTTCTTTTTTATCAGCAAGGTCAAACTAAGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCTTCTTCTATTTCTTTTTTATCAGCAAGGTCAAACTAAGGTTT  1000

seq1  AAAAGGAAACTTTCTACTTTCACAGTTCTTCCTGGTTGGTTTGCTATTTA  1050
      |||||||||||||||||||||   | ||||||||| ||||||||||||  
seq2  AAAAGGAAACTTTCTACTTTCCACGGTCTTCCTGGCTGGTTTGCTATT--  1048

seq1  AAATAATATGAACATTCTTGT-CAAATACT-CCTAGAACCATGTGAATTC  1098
      ||||||||||||||||||||| |||||||| ||||||||  |||||||||
seq2  AAATAATATGAACATTCTTGTCCAAATACTCCCTAGAACACTGTGAATTC  1098

seq1  ACTGTTTAGTATATCACATAATCAAATAAAAATCTCTCCTGAGAGTGCAA  1148
      |||||||||||  ||   ||||| | ||||| ||||| |||||||||| |
seq2  ACTGTTTAGTAATTCCACTAATC-AGTAAAATTCTCT-CTGAGAGTGC-A  1145

seq1  TAAATGGTAATTAATGAAGAATGGCTT  1175
      |||    | | ||||||||||||||||
seq2  TAA----TGAATAATGAAGAATGGCTT  1168

seq1: chr15_88964731_88964860
seq2: B6Ng01-006I22.g_798_899 (reverse)

seq1  GGAAGGAAGGAAGAAGGAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAAG  50
                           | |||||||||| ||||||||||||||||
seq2  ---------------------GGAAGGAAGGAA-GAAGGAAGGAAGGAAG  28

seq1  GAAGGAAGGAAGAAAGAACGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  100
      |||| ||||||| ||||| ||||||||| ||||||||||||||| |||||
seq2  GAAGAAAGGAAG-AAGAA-GAAAGAAAG-AAGAAAGAAAGAAAG-AAGAA  74

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  130
      || ||||||| |||| ||||||||||||||
seq2  AG-AAGAAAG-AAGAGAGAAAGAAAGAAAG  102