BAC Information

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BAC

Clone NameB6Ng01-006J09
Chromosome8 (Build37)
Map Location 109,179,343 - 109,180,244
singlet/doubletsinglet
Overlap geneCdh1
Upstream geneCtcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
Downstream geneTmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J09.bB6Ng01-006J09.g
ACCDH843402DH843403
length1,173906
definitionDH843402|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J09, 5' end.DH843403|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatggcattacaccctttgactatttcaatgaagtaaacaaa
cactggaattctgcctcatctttcttgatttttgtttcccaaaaagaaag
gtggctgagtaaattcagctagaaggcaaggaacttagccataaaacctg
atgaagatttcaatcaaagagaagtcccagatggagcttggagagaaaaa
gcaacagtggcccaggccctcccctcccccactgcatggcagggtggaag
ttaaacaaaatggagaatgcgaataggtctgctacagcatgttctttgta
aatggtcaagatctctagagagtagtggattaaattgcagatattatcta
gctaaaccccaaatcataaaagcatgaaattagtaattgactcaatttgc
ctcatttattagtagctcagacctctgcttgaattaatattgcccaatgg
aatttcaagcattggtgacatggcatatcatgacagagattagcgcctgc
ttctattactgtatttcaaataccccacatcctccaattaggttagatct
aatctaatatgcatgcttttggcactttcattgtcaatcagatgtgagag
tgagtgtgttttttttttttttctgtcatgttcatgttaggcaacgaggg
gctgcacagtctactttacgtgctatggtcttttcagctacacgttgttt
ataaatatgttttcaggtggtcttagcaaccccccctaccccaaaagggg
tcatgacccacaggctctgctgcctagcctcaggctttagaatatttttc
gaaggagccataccaatctcacttctaatgacccagcaaaacagccatga
gagttttctgcaagccccagcacgtcagtaccaccctcagactttccaac
ctctcccctgccagtgttgaaccacccacgagagacatcgtgggacgaga
gaccctcagccagtgccaattcattcactaagcaccgtacaaaccttggc
tgttttcaaatgcatcatggtcgtggggtctgtgacaacacgaactgctg
tcagatcgtgactacgggtacacagctttccacgccggatgtggggcatc
atcatcggtcactttggttgggcaatccggcattgacctctctcagcatc
tgaccctgatactggaagcacgt
gaattctaaattcatcattatcagtatttatgtaatcattaattcttcta
cacagcattactgtatgaaagcacatcttcatattgattcggcaggaaat
gtgcccaattgggtgggctgatgcccagggatcattaggctatgtaatag
tgacaggaaaggcatatcagcaacaagatacaatcctgggatgaagcctc
taaggaccctgtgttctcagagctcacccattgtacttattcagaagggt
gggccatctccagaaagcttacttgtatgccttagcctttcctagatgac
ttctgacttatacacatacatacacataaagtgaaagatgttgtcttggc
tcgggagatggcttagttgttaagagcactggttgttcttgtaaaggacc
tgagtgtggttttccatactgacaaggtagcttataatcatttgtaactc
aggttccaaggaactcagtgtcctccatgggtaccagctcacatatggta
cacatacctacctggagccaaaacacttatatacataaaaaagggagaaa
ggttgggcactagagagatggcttagcagttaagagcactagctactcct
tcaaaggaccctggtttaatttgtagcccacatggcagctcagaactgtc
tgtaactccagttcctaaggattcaacactcttactcagacatgatgtag
acaaaacagcagtgcacataaaaaaaataaaaaataaataaatatatctt
ttttaaatttggcatcctgcctgcatgtatgactctacaccagtagagat
catcagagggtcatggtggttatgagtcaccatgtggatgctaagaatag
aacaaaggacttgtagaagagcaggcaatggtagtaacctctgagccacc
ctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109179343_109180244
seq2: B6Ng01-006J09.g_66_971

seq1  GAATTCTAAATTCATCATTATCAGTATTTATGTAATCATTAATTCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTCATCATTATCAGTATTTATGTAATCATTAATTCTTCTA  50

seq1  CACAGCATTACTGTATGAAAGCACATCTTCATATTGATTCGGCAGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTACTGTATGAAAGCACATCTTCATATTGATTCGGCAGGAAAT  100

seq1  GTGCCCAATTGGGTGGGCTGATGCCCAGGGATCATTAGGCTATGTAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAATTGGGTGGGCTGATGCCCAGGGATCATTAGGCTATGTAATAG  150

seq1  TGACAGGAAAGGCATATCAGCAACAAGATACAATCCTGGGATGAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAAGGCATATCAGCAACAAGATACAATCCTGGGATGAAGCCTC  200

seq1  TAAGGACCCTGTGTTCTCAGAGCTCACCCATTGTACTTATTCAGAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCCTGTGTTCTCAGAGCTCACCCATTGTACTTATTCAGAAGGGT  250

seq1  GGGCCATCTCCAGAAAGCTTACTTGTATGCCTTAGCCTTTCCTAGATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATCTCCAGAAAGCTTACTTGTATGCCTTAGCCTTTCCTAGATGAC  300

seq1  TTCTGACTTATACACATACATACACATAAAGTGAAAGATGTTGTCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTATACACATACATACACATAAAGTGAAAGATGTTGTCTTGGC  350

seq1  TCGGGAGATGGCTTAGTTGTTAAGAGCACTGGTTGTTCTTGTAAAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGATGGCTTAGTTGTTAAGAGCACTGGTTGTTCTTGTAAAGGACC  400

seq1  TGAGTGTGGTTTTCCATACTGACAAGGTAGCTTATAATCATTTGTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGTTTTCCATACTGACAAGGTAGCTTATAATCATTTGTAACTC  450

seq1  AGGTTCCAAGGAACTCAGTGTCCTCCATGGGTACCAGCTCACATATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCAAGGAACTCAGTGTCCTCCATGGGTACCAGCTCACATATGGTA  500

seq1  CACATACCTACCTGGAGCCAAAACACTTATATACATAAAAAAGGGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTACCTGGAGCCAAAACACTTATATACATAAAAAAGGGAGAAA  550

seq1  GGTTGGGCACTAGAGAGATGGCTTAGCAGTTAAGAGCACTAGCTACTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGCACTAGAGAGATGGCTTAGCAGTTAAGAGCACTAGCTACTCCT  600

seq1  TCAAAGGACCCTGGTTTAATTTGTAGCCCACATGGCAGCTCAGAACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGACCCTGGTTTAATTTGTAGCCCACATGGCAGCTCAGAACTGTC  650

seq1  TGTAACTCCAGTTCCTAAGGATTCAACACTCTTACTCAGACATGATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCAGTTCCTAAGGATTCAACACTCTTACTCAGACATGATGTAG  700

seq1  ACAAAACAGCAGTGCACATAAAAAAAATAAAAAATAAATAAATATATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGCAGTGCACATAAAAAAAATAAAAAATAAATAAATATATCTT  750

seq1  TTT--AAATTGGCATCCTGCCTGCATGTATGACTCTACACCAGTAGAGAT  798
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTGGCATCCTGCCTGCATGTATGACTCTACACCAGTAGAGAT  800

seq1  CATCAGA-GGTCATGGTGGTTATGAGTCACCATGTGGATGCTAGGAATAG  847
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  CATCAGAGGGTCATGGTGGTTATGAGTCACCATGTGGATGCTAAGAATAG  850

seq1  AACAAAGGACCTGTAGAAGAGCAGGCAATGGTAGTAACCTCTGAGCCA-C  896
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  AACAAAGGACTTGTAGAAGAGCAGGCAATGGTAGTAACCTCTGAGCCACC  900

seq1  CTCTCC  902
      ||||||
seq2  CTCTCC  906