BAC Information

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BAC

Clone NameB6Ng01-006M09
Chromosome8 (Build37)
Map Location 6,790,110 - 6,791,279
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M09.bB6Ng01-006M09.g
ACCDH843540DH843541
length1,1551,162
definitionDH843540|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M09, 5' end.DH843541|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggaattactgcaagaagagtgggtaattcaggagcagctgc
ttcacccaaaagcctaccacagcctcatgaagactcacaaaatctacatt
cattcctcaagttccttggaaaagctgcctgctggaaatctccttacttc
aactccttacttttggtgtatataactttgaggatgggttttctaaggat
tttaataattaaactatagtttaatccagatgaaacgtaagcctagaaac
atagatcagggctcccttcttcacattacttaagcagactgttttagttt
gttttatgtttgtcaatattctcaaagacccagatgtacatgagttatgg
agatgcaatttgtcgatctatatatcaaaagttggtcctgatgtggatgc
agcaagtaggagatgttttctcatcattaaaataagacatggaaagtgtg
gaaaaatgggatatgccaagagtagttgctgagaaagtataaggccttga
attcagatctctggcacatatgtttaaaaaaaatgtgtaaaagcaagttt
ctataacatagcaccagagagcagagacaggaggctgcttcggcttgcag
aatagtccccatagctaagacatagatattcatactgggctgggaagatg
ctcagaggttgaatgggttctgcacttgcagaggtcttctgttaggttcc
cagaagtcaggtggcttacaggcaactataacttcagctacaggacatgt
gataccttcatctggaccctgaaggcacctgcacctatgaccaaacctca
catgcatgtacacaatattagaataataaattaagaaatattatttttaa
aactcttaatggtcaaagaaaacaataagaactaagcaaacaaatacatt
gtagtgtattttaaaaattgataagtgcaattggcagatggatggcccac
actggatcaaactttacagtacagtgagtagtttgggagaagtttcatgt
aatggagaaattgatgaagacttaaggtgtgaggcacatgcctgatagga
attctaggagaaaggaaatccaagacagaaatggtggagatttgtcattt
gtgagcctactggctaatttacagcactcgaaggtgtgagtacacactgg
gaagt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccagagctaaagggatcttcaccctata
ggtggaacaacatatgactatcagtaccctgagctcttgacctctagctg
caatatgtatcaaagatggctagttcgtcatcacttgaaagagaggtcaa
tggacctgcagacttttgtgctcgtacaggaacgccaggtcataagtgaa
agtgcgtgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6790110_6791279
seq2: B6Ng01-006M09.b_45_1199 (reverse)

seq1  ACTTCCCAGTGTGGTACCTCACACCCTTCCTGATGCTGTTAAATATGCTC  50
      |||||||||||| ||| |||||| |||||  | ||||| |||||  || |
seq2  ACTTCCCAGTGT-GTA-CTCACA-CCTTCGAG-TGCTG-TAAATTAGC-C  44

seq1  AGTAGAGCTTCACAAATGCCAAATACTCACCATTCTTGGTCTTTGTATTG  100
      ||||| || ||||||||| |||||   ||||||| |  ||| ||| ||| 
seq2  AGTAG-GC-TCACAAATGACAAATCTCCACCATT-TCTGTC-TTGGATT-  89

seq1  TCCTTTCTTCCTAGATTTCCTATCA-GCATGTTGCCTCACACTTTAAAGT  149
      ||||||| ||||||| ||||||||| ||||| |||||||||| || ||||
seq2  TCCTTTC-TCCTAGAATTCCTATCAGGCATG-TGCCTCACACCTT-AAGT  136

seq1  CTTCATCAATTTCTCCATTACATGAAAC-TCTCCCAAACTACTCACTGTA  198
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTTCATCAATTTCTCCATTACATGAAACTTCTCCCAAACTACTCACTGT-  185

seq1  ACTGTAAAGTTTGATCCAGTGTTGGGCCATCCATTCTGCCAATTGCACTT  248
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  ACTGTAAAGTTTGATCCAGTG-TGGGCCATCCA-TCTGCCAATTGCACTT  233

seq1  ATCAATTTTTAAAATACACTACAATGTATTTGTTTGCTTAGTTCTTATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTTAAAATACACTACAATGTATTTGTTTGCTTAGTTCTTATTG  283

seq1  TTTTCTTTGACCATTAAGAGTTTTAAAAATAATATTTCTTAATTTATTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGACCATTAAGAGTTTTAAAAATAATATTTCTTAATTTATTAT  333

seq1  TCTAATATTGTGTACATGCATGTGAGGTTTGGTCATAGGTGCAGGTGCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATTGTGTACATGCATGTGAGGTTTGGTCATAGGTGCAGGTGCCT  383

seq1  TCAGGGTCCAGATGAAGGTATCACATGTCCTGTAGCTGAAGTTATAGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCAGATGAAGGTATCACATGTCCTGTAGCTGAAGTTATAGTTG  433

seq1  CCTGTAAGCCACCTGACTTCTGGGAACCTAACAGAAGACCTCTGCAAGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCCACCTGACTTCTGGGAACCTAACAGAAGACCTCTGCAAGTG  483

seq1  CAGAACCCATTCAACCTCTGAGCATCTTCCCAGCCCAGTATGAATATCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCATTCAACCTCTGAGCATCTTCCCAGCCCAGTATGAATATCTA  533

seq1  TGTCTTAGCTATGGGGACTATTCTGCAAGCCGAAGCAGCCTCCTGTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGCTATGGGGACTATTCTGCAAGCCGAAGCAGCCTCCTGTCTCT  583

seq1  GCTCTCTGGTGCTATGTTATAGAAACTTGCTTTTACACATTTTTTTTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGGTGCTATGTTATAGAAACTTGCTTTTACACATTTTTTTTAAA  633

seq1  CATATGTGCCAGAGATCTGAATTCAAGGCCTTATACTTTCTCAGCAACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGCCAGAGATCTGAATTCAAGGCCTTATACTTTCTCAGCAACTA  683

seq1  CTCTTGGCATATCCCATTTTTCCACACTTTCCATGTCTTATTTTAATGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCATATCCCATTTTTCCACACTTTCCATGTCTTATTTTAATGAT  733

seq1  GAGAAAACATCTCCTACTTGCTGCATCCACATCAGGACCAACTTTTGATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACATCTCCTACTTGCTGCATCCACATCAGGACCAACTTTTGATA  783

seq1  TATAGATCGACAAATTGCATCTCCATAACTCATGTACATCTGGGTCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCGACAAATTGCATCTCCATAACTCATGTACATCTGGGTCTTTG  833

seq1  AGAATATTGACAAACATAAAACAAACTAAAACAGTCTGCTTAAGTAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTGACAAACATAAAACAAACTAAAACAGTCTGCTTAAGTAATGT  883

seq1  GAAGAAGGGAGCCCTGATCTATGTTTCTAGGCTTACGTTTCATCTGGATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGGAGCCCTGATCTATGTTTCTAGGCTTACGTTTCATCTGGATT  933

seq1  AAACTATAGTTTAATTATTAAAATCCTTAGAAAACCCATCCTCAAAGTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAGTTTAATTATTAAAATCCTTAGAAAACCCATCCTCAAAGTTA  983

seq1  TATACACCAAAAGTAAGGAGTTGAAGTAAGGAGATTTCCAGCAGGCAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCAAAAGTAAGGAGTTGAAGTAAGGAGATTTCCAGCAGGCAGCT  1033

seq1  TTTCCAAGGAACTTGAGGAATGAATGTAGATTTTGTGAGTCTTCATGAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGAACTTGAGGAATGAATGTAGATTTTGTGAGTCTTCATGAGG  1083

seq1  CTGTGGTAGGCTTTTGGGTGAAGCAGCTGCTCCTGAATTACCCACTCTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAGGCTTTTGGGTGAAGCAGCTGCTCCTGAATTACCCACTCTTC  1133

seq1  TTGCAGTAATTCCAGTGAATTC  1170
      ||||||||||||||||||||||
seq2  TTGCAGTAATTCCAGTGAATTC  1155